Mercurial > repos > iuc > recentrifuge
view test-data/centrifuge_test/test4_rcf.data.tsv @ 4:12f0968f171c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit fbb5d7bb68cbb5f497cdda3c0697b21b046a8262
| author | iuc |
|---|---|
| date | Thu, 25 Jan 2024 17:02:43 +0000 |
| parents | fe733f05c2f8 |
| children |
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Samples input_dir/centrifuge_1_out input_dir/centrifuge_1_out input_dir/centrifuge_1_out input_dir/centrifuge_2_out input_dir/centrifuge_2_out input_dir/centrifuge_2_out input_dir/centrifuge_out input_dir/centrifuge_out input_dir/centrifuge_out SHARED_species SHARED_species SHARED_species SHARED_genus SHARED_genus SHARED_genus SHARED_family SHARED_family SHARED_family SHARED_order SHARED_order SHARED_order SHARED_class SHARED_class SHARED_class SHARED_phylum SHARED_phylum SHARED_phylum SHARED_SUMMARY SHARED_SUMMARY SHARED_SUMMARY Details Details Stats cnt una sco cnt una sco cnt una sco cnt una sco cnt una sco cnt una sco cnt una sco cnt una sco cnt una sco cnt una sco Rank Name Id 1 75 0 392.58666666666664 75 0 392.58666666666664 75 0 392.58666666666664 31 0 488.35483870967744 35 0 489.0032653061224 67 0 446.6581994080768 73 0 442.0475236076006 75 0 440.72856742250906 75 0 440.72856742250906 75 0 440.72856742250906 no_rank root 2 75 0 392.58666666666664 75 0 392.58666666666664 75 0 392.58666666666664 31 0 488.35483870967744 35 0 489.0032653061224 67 0 446.6581994080768 73 0 442.0475236076006 75 0 440.72856742250906 75 0 440.72856742250906 75 0 440.72856742250906 superkingdom Bacteria 1224 75 0 392.58666666666664 75 0 392.58666666666664 75 0 392.58666666666664 31 0 488.35483870967744 35 0 489.0032653061224 67 0 446.6581994080768 73 0 442.0475236076006 75 0 440.72856742250906 75 75 440.72856742250906 75 0 440.72856742250906 phylum Proteobacteria 1236 75 2 392.58666666666664 75 2 392.58666666666664 75 2 392.58666666666664 31 0 488.35483870967744 35 0 489.0032653061224 67 0 446.6581994080768 73 0 442.0475236076006 75 75 440.72856742250906 0 0 -inf 75 2 440.72856742250906 class Gammaproteobacteria 91347 73 6 390.56164383561645 73 6 390.56164383561645 73 6 390.56164383561645 31 0 488.35483870967744 35 0 489.0032653061224 67 0 446.6581994080768 73 73 442.0475236076006 0 0 -inf 0 0 -inf 73 6 442.0475236076006 order Enterobacteriales 543 67 32 400.34328358208955 67 32 400.34328358208955 67 32 400.34328358208955 31 0 488.35483870967744 35 0 489.0032653061224 67 67 446.6581994080768 0 0 -inf 0 0 -inf 0 0 -inf 67 32 446.6581994080768 family Enterobacteriaceae 561 35 4 494.0285714285714 35 4 494.0285714285714 35 4 494.0285714285714 31 0 488.35483870967744 35 35 489.0032653061224 0 0 -inf 0 0 -inf 0 0 -inf 0 0 -inf 35 4 489.0032653061224 genus Escherichia 562 31 31 488.35483870967744 31 31 488.35483870967744 31 31 488.35483870967744 31 31 488.35483870967744 0 0 -inf 0 0 -inf 0 0 -inf 0 0 -inf 0 0 -inf 31 31 488.35483870967744 species Escherichia coli