# HG changeset patch
# User iuc
# Date 1693457212 0
# Node ID b5407cc2bf51809701aa475e9d5a23226d58c330
# Parent  824497684a1ff99855eb68c760629699ec24b452
planemo upload for repository https://github.com/galaxyproject/tools-iuc/blob/master/tools/recentrifuge commit 96f8a533278b4b6394aebd7a8f537513b0d29b1a

diff -r 824497684a1f -r b5407cc2bf51 macro.xml
--- a/macro.xml	Mon Oct 31 18:18:11 2022 +0000
+++ b/macro.xml	Thu Aug 31 04:46:52 2023 +0000
@@ -1,6 +1,6 @@
 <?xml version="1.0"?>
 <macros>
-  <token name="@TOOL_VERSION@">1.10.0</token>
+  <token name="@TOOL_VERSION@">1.12.1</token>
   <token name="@VERSION_SUFFIX@">0</token>
   <token name="@PROFILE@">21.05</token>
   <xml name="version_command">
diff -r 824497684a1f -r b5407cc2bf51 recentrifuge.xml
--- a/recentrifuge.xml	Mon Oct 31 18:18:11 2022 +0000
+++ b/recentrifuge.xml	Thu Aug 31 04:46:52 2023 +0000
@@ -187,9 +187,9 @@
         </section>
     <!-- Detailed more fine parameters -->
         <section name="more_advanced_option" title=" Fine tuning of algorithm parameters">
-            <param name="ctrlminscore" argument="--ctrlminscore" type="integer" optional="true" value="0" label="Minimum score in control samples to pass the filter" help="Minimum score/confidence of the classification of a read in control samples to pass the quality filter; it defaults to minscore"/>
-            <param name="ctrlmintaxa"  argument="--ctrlmintaxa"  type="integer" optional="true" value="0" label="Minimum taxa to avoid collapsing one level into the parent" help="If not specified a value will be automatically assigned"/>
-            <param name="summary" argument="--summary" type="select" label="Add a summary of the analysis (default is Add)" help="Select to 'add' summary samples to other samples, or to 'only' show summary samples or to 'avoid' summaries at all">
+            <param argument="--ctrlminscore" type="integer" optional="true" value="0" label="Minimum score in control samples to pass the filter" help="Minimum score/confidence of the classification of a read in control samples to pass the quality filter; it defaults to minscore"/>
+            <param argument="--ctrlmintaxa"  type="integer" optional="true" value="0" label="Minimum taxa to avoid collapsing one level into the parent" help="If not specified a value will be automatically assigned"/>
+            <param argument="--summary" type="select" label="Add a summary of the analysis (default is Add)" help="Select to 'add' summary samples to other samples, or to 'only' show summary samples or to 'avoid' summaries at all">
                 <option value="ADD" selected="true">Add</option>
                 <option value="ONLY">Only</option>
                 <option value="AVOID">Avoid</option>