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comparison red.xml @ 2:db57bc3b57af draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/red commit f6cf3fc8a9446a0a591ad7e0e2d81101b42fc714
author iuc
date Mon, 18 Mar 2024 15:56:22 +0000
parents 18a46265455b
children
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1:18a46265455b 2:db57bc3b57af
2 <description>repeat masking</description> 2 <description>repeat masking</description>
3 <macros> 3 <macros>
4 <token name="@TOOL_VERSION@">2018.09.10</token> 4 <token name="@TOOL_VERSION@">2018.09.10</token>
5 <token name="@VERSION_SUFFIX@">1</token> 5 <token name="@VERSION_SUFFIX@">1</token>
6 </macros> 6 </macros>
7 <xrefs>
8 <xref type="bio.tools">red</xref>
9 </xrefs>
7 <requirements> 10 <requirements>
8 <requirement type="package" version="@TOOL_VERSION@">red</requirement> 11 <requirement type="package" version="@TOOL_VERSION@">red</requirement>
9 </requirements> 12 </requirements>
10 <command detect_errors="exit_code"><![CDATA[ 13 <command detect_errors="exit_code"><![CDATA[
11 mkdir input output && 14 mkdir input output &&
21 ]]></command> 24 ]]></command>
22 <inputs> 25 <inputs>
23 <param label="Genome sequence to mask" name="input" type="data" format="fasta" /> 26 <param label="Genome sequence to mask" name="input" type="data" format="fasta" />
24 </inputs> 27 </inputs>
25 <outputs> 28 <outputs>
26 <data format="fasta" name="masked" from_work_dir="output/genome.msk" /> 29 <data format="fasta" name="masked" label="${tool.name} on ${on_string}: masked genome" from_work_dir="output/genome.msk" />
27 <data format="bed" name="bed" from_work_dir="output/genome.bed" /> 30 <data format="bed" name="bed" label="${tool.name} on ${on_string}: bed" from_work_dir="output/genome.bed" />
28 </outputs> 31 </outputs>
29 <tests> 32 <tests>
30 <test> 33 <test>
31 <param name="input" value="small.fa" /> 34 <param name="input" value="small.fa" />
32 <output name="masked" file="small.msk" /> 35 <output name="masked" file="small.msk" />