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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
author iuc
date Thu, 09 Oct 2025 08:39:02 +0000
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8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
iuc
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1 <tool name="Regex switch" id="regex_switch" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" tool_type="expression">
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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2 <description>boolean from regex on element identifier</description>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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3 <macros>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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4 <token name="@TOOL_VERSION@">1.0.0</token>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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5 <token name="@VERSION_SUFFIX@">0</token>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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6 </macros>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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7 <expression type="ecma5.1"><![CDATA[{
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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8 var name = $job.input.name;
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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9 var pat = $job.pattern;
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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10 var matched = false;
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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11
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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12 try {
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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13 var re = new RegExp(pat);
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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14 matched = re.test(name);
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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15 } catch (e) {
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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16 return { "__error_message": "Invalid regular expression: " + (e && e.message ? e.message : String(e)) };
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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17 }
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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18
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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19 return { "matched": matched, "unmatched": !matched };
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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20 }]]></expression>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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21 <inputs>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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22 <param name="input" type="data" format="data"
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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23 label="Dataset" />
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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24 <param name="pattern" sanitize="false" type="text" label="Regex pattern"
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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25 help="Example: \.csv$">
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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26 <sanitizer>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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27 <valid>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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28 <add preset="string.printable"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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29 </valid>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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30 </sanitizer>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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31 <validator type="empty_field" message="Please enter a regular expression."/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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32 </param>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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33 </inputs>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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34 <outputs>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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35 <output type="boolean" name="matched" from="matched" label="Match result"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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36 <output type="boolean" name="unmatched" from="unmatched" label="Unmatched result"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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37 </outputs>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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38 <tests>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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39 <test expect_num_outputs="2">
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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40 <param name="input" value="sample.csv" ftype="txt"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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41 <param name="pattern" value="\.csv$"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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42 <output name="matched" value_json="true"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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43 <output name="unmatched" value_json="false"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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44 </test>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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45
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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46 <test expect_num_outputs="2">
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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47 <param name="input" value="table.tsv" ftype="txt"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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48 <param name="pattern" value="\.csv$"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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49 <output name="matched" value_json="false"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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50 <output name="unmatched" value_json="true"/>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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51 </test>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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52 </tests>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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53 <help><![CDATA[
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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54 **Regex switch**
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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55
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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56 Matches a regular expression against the name of the input file. It emits two booleans:
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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57 `matched` (the match result) and `unmatched` (its negation). Connect either to a step's **Conditionally skip step?** input.
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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58
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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59 **Regex syntax reference:** https://262.ecma-international.org/16.0/index.html#sec-patterns
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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60 ]]></help>
8da8330208f4 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/regex_switch commit 502f06ff9cb9edd0eceaba726b2cc848757e34dd
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61 </tool>