Mercurial > repos > iuc > repmatch_gff3

comparison repmatch_gff3.xml @ 7:79f505a25bb8 draft default tip

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repmatch_gff3 commit b50166c05f3484b0d0171cd668653efb54cf0545"
author iuc
date Mon, 16 Dec 2019 15:45:16 -0500
parents 7cb4c6424ff8
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6:7cb4c6424ff8 7:79f505a25bb8
94 </test> 94 </test>
95 </tests> 95 </tests>
96 <help> 96 <help>
97 **What it does** 97 **What it does**
98 98
99 RepMatch accepts two or more input datasets, and starts by defining peak-pair midpoints in the first dataset. It then 99 RepMatch accepts two or more input datasets (in gff format https://github.com/The-Sequence-Ontology/Specifications/blob/master/gff3.md), and starts by defining peak-pair midpoints in the first dataset. It then
100 discovers all peak-pair midpoints in the second dataset that are within the distance, defined by the tool's **Maximum 100 discovers all peak-pair midpoints in the second dataset that are within the distance, defined by the tool's **Maximum
101 distance between peaks in different replicates to allow merging** parameter, from the peak-pair midpoint coordinate in 101 distance between peaks in different replicates to allow merging** parameter, from the peak-pair midpoint coordinate in
102 the first dataset. When encountering multiple candidates to match (one-to-many), RepMatch uses the method defined by 102 the first dataset. When encountering multiple candidates to match (one-to-many), RepMatch uses the method defined by
103 the tool's **Method of finding match** parameter so that there is at most only a one-to-one match across the two datasets. 103 the tool's **Method of finding match** parameter so that there is at most only a one-to-one match across the two datasets.
104 This method provides the following options: 104 This method provides the following options: