Mercurial > repos > iuc > repmatch_gff3

comparison repmatch_gff3.xml @ 2:d7f1312b3455 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repmatch_gff3 commit 4eb5632ca7b54134911d40ae94eaf155dc673a71
author iuc
date Fri, 13 Jan 2017 10:27:44 -0500
parents e5c7fffdc078
children 6acaa2c93f47
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1:e5c7fffdc078 2:d7f1312b3455
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="repmatch_gff3" name="RepMatch" version="@WRAPPER_VERSION@.0"> 2 <tool id="repmatch_gff3" name="RepMatch" version="@WRAPPER_VERSION@.1">
3 <description>Match paired peaks from two or more replicates</description> 3 <description>Match paired peaks from two or more replicates</description>
4 <macros> 4 <macros>
5 <import>repmatch_gff3_macros.xml</import> 5 <import>repmatch_gff3_macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements" /> 7 <expand macro="requirements" />
8 <stdio>
9 <!-- Anything other than zero is an error -->
10 <exit_code range=":-1" />
11 <exit_code range="1:" />
12 <!-- Check stderr in case the return code has not been set -->
13 <regex match="Error:" />
14 <regex match="Exception:" />
15 </stdio>
8 <command> 16 <command>
9 python $__tool_directory__/repmatch_gff3.py 17 python $__tool_directory__/repmatch_gff3.py
10 #for $i in $input: 18 #for $i in $input:
11 --input "${i}" "${i.hid}" 19 --input "${i}" "${i.hid}"
12 #end for 20 #end for