Mercurial > repos > iuc > repmatch_gff3

comparison repmatch_gff3.xml @ 1:e5c7fffdc078 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/repmatch_gff3 commit 0e7c1b37cf73425c6637b4e196fdeb290e042bc1
author iuc
date Tue, 26 Jul 2016 06:10:53 -0400
parents a072f0f30ea3
children d7f1312b3455
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0:a072f0f30ea3 1:e5c7fffdc078
75 <filter>output_files_cond["output_files"] in ["all", "matched_peaks_unmatched_peaks"]</filter> 75 <filter>output_files_cond["output_files"] in ["all", "matched_peaks_unmatched_peaks"]</filter>
76 </data> 76 </data>
77 <data name="output_matched_peaks" format="gff" label="Data MP: ${tool.name} on ${on_string}" /> 77 <data name="output_matched_peaks" format="gff" label="Data MP: ${tool.name} on ${on_string}" />
78 </outputs> 78 </outputs>
79 <tests> 79 <tests>
80 <param name="input" value="closest_matched_pairs_input1.gff" ftype="gff" /> 80 <test>
81 <param name="input" value="largest_matched_pairs_input1.gff" ftype="gff" /> 81 <param name="input" value="closest_matched_pairs_input1.gff,largest_matched_pairs_input1.gff" ftype="gff" />
82 <param name="method" value="closest" /> 82 <param name="method" value="closest" />
83 <param name="distance" value="50" /> 83 <param name="distance" value="50" />
84 <param name="replicates" value="2" /> 84 <param name="replicates" value="2" />
85 <param name="output_files" value="all" /> 85 <param name="output_files" value="all" />
86 <param name="step" value="0" /> 86 <param name="step" value="0" />
87 <param name="low_limit" value="-1000" /> 87 <param name="low_limit" value="-1000" />
88 <param name="up_limit" value="1000" /> 88 <param name="up_limit" value="1000" />
89 <output name="output_statistics_table" file="statistics_table_out1.tabular" ftype="tabular" /> 89 <output name="output_statistics_table" file="statistics_table_out1.tabular" ftype="tabular" />
90 <output name="output_statistics_histogram" file="statistics_histogram_out1.pdf" ftype="pdf" compare="sim_size" /> 90 <output name="output_statistics_histogram" file="magic.pdf" ftype="pdf" compare="contains" />
91 <output name="output_detail" file="detail_out1.tabular" ftype="tabular" /> 91 <output name="output_detail" file="detail_out1.tabular" ftype="tabular" />
92 <output name="output_unmatched_peaks" file="unmatched_peaks_out1.tabular" ftype="tabular" /> 92 <output name="output_unmatched_peaks" file="unmatched_peaks_out1.tabular" ftype="tabular" />
93 <output name="output_matched_peaks" file="matched_peaks_out1.gff" ftype="gff" /> 93 <output name="output_matched_peaks" file="matched_peaks_out1.gff" ftype="gff" />
94 </test>
94 </tests> 95 </tests>
95 <help> 96 <help>
96 **What it does** 97 **What it does**
97 98
98 RepMatch accepts two or more input datasets, and starts by defining peak-pair midpoints in the first dataset. It then 99 RepMatch accepts two or more input datasets, and starts by defining peak-pair midpoints in the first dataset. It then