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annotate README.rst @ 4:d681e989ac95 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 4c4199b39a51216c83594762baadcadd81c519b2
author iuc
date Fri, 09 Jun 2017 07:34:30 -0400
parents 318b2a9d54dd
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ace9f5a2b40f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a89b30e7cbe4e7db22f36773112f7ed833285cb3
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ace9f5a2b40f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a89b30e7cbe4e7db22f36773112f7ed833285cb3
iuc
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2 System Requirements
ace9f5a2b40f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a89b30e7cbe4e7db22f36773112f7ed833285cb3
iuc
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3 ===================
ace9f5a2b40f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a89b30e7cbe4e7db22f36773112f7ed833285cb3
iuc
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ace9f5a2b40f planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit a89b30e7cbe4e7db22f36773112f7ed833285cb3
iuc
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5 - **Memory**: To run efficiently, RNA-STAR requires enough free memory to
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318b2a9d54dd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
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6 hold the SA-indexed reference genome in RAM. For Human Genome hg19 this
318b2a9d54dd planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 0d434bca5083e908114d93e11094e48f49b98ed1
iuc
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7 index is about 27GB and running RNA-STAR requires approximately ~30GB of RAM.
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d681e989ac95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 4c4199b39a51216c83594762baadcadd81c519b2
iuc
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8 For custom genomes, the rule of thumb is to multiply the size of the
d681e989ac95 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 4c4199b39a51216c83594762baadcadd81c519b2
iuc
parents: 3
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9 reference FASTA file by 9 to estimate the required amount of RAM.