Mercurial > repos > iuc > rgrnastar

comparison macros.xml @ 8:d5659efd66aa draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit be695260aa6fe507c80f932ea9b2e63b2662d167
author iuc
date Sat, 09 Jun 2018 14:33:39 -0400
parents a70a7eebb435
children d82339e37e8e
comparison
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7:a70a7eebb435 8:d5659efd66aa
15 </xml> 15 </xml>
16 <xml name="@SJDBOPTIONS@"> 16 <xml name="@SJDBOPTIONS@">
17 <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/> 17 <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/>
18 <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/> 18 <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/>
19 </xml> 19 </xml>
20 <xml name="dbKeyActions">
21 <actions>
22 <conditional name="refGenomeSource.geneSource">
23 <when value="indexed">
24 <action type="metadata" name="dbkey">
25 <option type="from_data_table" name="rnastar_index2" column="1" offset="0">
26 <filter type="param_value" column="0" value="#" compare="startswith" keep="False"/>
27 <filter type="param_value" ref="refGenomeSource.GTFconditional.genomeDir" column="0"/>
28 </option>
29 </action>
30 </when>
31 <when value="history">
32 <action type="metadata" name="dbkey">
33 <option type="from_param" name="refGenomeSource.genomeFastaFiles" param_attribute="dbkey" />
34 </action>
35 </when>
36 </conditional>
37 </actions>
38 </xml>
20 </macros> 39 </macros>