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view test-data/test-cache/tophat-test/genomeParameters.txt @ 28:3e94726bfa9d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 452556bcdcc3fe4e9ace07201be2365cd6f99e2f
author iuc
date Sun, 11 Feb 2024 00:01:54 +0000
parents 5ec75f5dae3c
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### STAR   --runMode genomeGenerate   --genomeDir tempstargenomedir   --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa      --genomeSAindexNbases 5
### GstrandBit 32
versionGenome	2.7.4a
genomeType	Full
genomeFastaFiles	tools/rgrnastar/test-data/tophat_test.fa 
genomeSAindexNbases	5
genomeChrBinNbits	18
genomeSAsparseD	1
genomeTransformType	None
genomeTransformVCF	-
sjdbOverhang	0
sjdbFileChrStartEnd	- 
sjdbGTFfile	-
sjdbGTFchrPrefix	-
sjdbGTFfeatureExon	exon
sjdbGTFtagExonParentTranscript	transcript_id
sjdbGTFtagExonParentGene	gene_id
sjdbInsertSave	Basic
genomeFileSizes	262144 5366