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view test-data/test-cache/tophat-test/genomeParameters.txt @ 27:79de45b5069b draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 65fa34f035934b4e9c1fbeb5dffe00b12e6a0f32
author iuc
date Fri, 01 Sep 2023 13:17:29 +0000
parents 5ec75f5dae3c
children
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### STAR   --runMode genomeGenerate   --genomeDir tempstargenomedir   --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa      --genomeSAindexNbases 5
### GstrandBit 32
versionGenome	2.7.4a
genomeType	Full
genomeFastaFiles	tools/rgrnastar/test-data/tophat_test.fa 
genomeSAindexNbases	5
genomeChrBinNbits	18
genomeSAsparseD	1
genomeTransformType	None
genomeTransformVCF	-
sjdbOverhang	0
sjdbFileChrStartEnd	- 
sjdbGTFfile	-
sjdbGTFchrPrefix	-
sjdbGTFfeatureExon	exon
sjdbGTFtagExonParentTranscript	transcript_id
sjdbGTFtagExonParentGene	gene_id
sjdbInsertSave	Basic
genomeFileSizes	262144 5366