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directory /test-data/ @ 22:980d2a2e1180 draft

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dir. test-cache/ tophat-test drwxr-xr-x
file filtered.barcodes.txt 6698 -rw-r--r--
file filtered3.Homo_sapiens.GRCh38.100.chr21.gtf 192967 -rw-r--r--
file filtered3.Homo_sapiens.GRCh38.dna.chromosome.21.fa.gz 144517 -rw-r--r--
file filtered3.bam 136127 -rw-r--r--
file indrop.R1.fastq.gz 30004 -rw-r--r--
file indrop.R2.fastq.gz 32412 -rw-r--r--
file indrop.barcodes1.txt 4416 -rw-r--r--
file indrop.barcodes2.txt 3840 -rw-r--r--
file pbmc_1k_v2_L001.R1.10k.fastq.gz 343789 -rw-r--r--
file pbmc_1k_v2_L001.R2.10k.fastq.gz 778979 -rw-r--r--
file rnastar_index2x_versioned.loc 221 -rw-r--r--
file rnastar_test.log 1770 -rw-r--r--
file rnastar_test2.log 1771 -rw-r--r--
file rnastar_test2_mapped_reads.bam 4081 -rw-r--r--
file rnastar_test2_splicejunctions.bed 76 -rw-r--r--
file rnastar_test_genomeSAindexNbases.bed 76 -rw-r--r--
file rnastar_test_genomeSAindexNbases.log 1966 -rw-r--r--
file rnastar_test_genomeSAindexNbases_02.bed 76 -rw-r--r--
file rnastar_test_genomeSAindexNbases_02.log 1966 -rw-r--r--
file rnastar_test_mapped_reads.bam 3996 -rw-r--r--
file rnastar_test_mapped_reads_genomeSAindexNbases.bam 4043 -rw-r--r--
file rnastar_test_mapped_reads_genomeSAindexNbases_02.bam 4043 -rw-r--r--
file rnastar_test_mapped_reads_twopass.bam 4497 -rw-r--r--
file rnastar_test_splicejunctions.bed 76 -rw-r--r--
file rnastar_test_splicejunctions_twopass.bed 76 -rw-r--r--
file rnastar_test_transcriptome_mapped_reads.bam 1518 -rw-r--r--
file rnastar_test_twopass.log 1771 -rw-r--r--
file smartseq.cellids.txt 84 -rw-r--r--
file smartseq1.R1.fastq.gz 20969 -rw-r--r--
file smartseq1.R2.fastq.gz 22219 -rw-r--r--
file smartseq2.R1.fastq.gz 20949 -rw-r--r--
file smartseq2.R2.fastq.gz 21976 -rw-r--r--
file smartseq3.R1.fastq.gz 20998 -rw-r--r--
file smartseq3.R2.fastq.gz 22503 -rw-r--r--
file smartseq4.R1.fastq.gz 24846 -rw-r--r--
file smartseq4.R2.fastq.gz 27206 -rw-r--r--
file smartseq5.R1.fastq.gz 23614 -rw-r--r--
file smartseq5.R2.fastq.gz 25798 -rw-r--r--
file smartseq6.R1.fastq.gz 24487 -rw-r--r--
file smartseq6.R2.fastq.gz 27202 -rw-r--r--
file smartseq7.R1.fastq.gz 25415 -rw-r--r--
file smartseq7.R2.fastq.gz 27024 -rw-r--r--
file smartseq8.R1.fastq.gz 25143 -rw-r--r--
file smartseq8.R2.fastq.gz 26606 -rw-r--r--
file smartseq9.R1.fastq.gz 25326 -rw-r--r--
file smartseq9.R2.fastq.gz 27197 -rw-r--r--
file test1.gtf 441 -rw-r--r--
file test3.chimjunc.tabular 3349 -rw-r--r--
file test3.fastqsanger 14719 -rw-r--r--
file test3.fastqsanger.gz 693 -rw-r--r--
file test3.ref.fa 988 -rw-r--r--
file tophat_in2.fastqsanger 17703 -rw-r--r--
file tophat_in3.fastqsanger 17703 -rw-r--r--
file tophat_test.fa 680 -rw-r--r--
file tophat_test_reads_per_gene.txt 91 -rw-r--r--