Mercurial > repos > iuc > rgrnastar

view macros.xml @ 5:99b17b74a8cd draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 528ca3b14c2ca9b7ac18a0f9d80a5f4a235707bf
author iuc
date Thu, 12 Oct 2017 04:59:08 -0400
parents 318b2a9d54dd
children a70a7eebb435
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<macros>
    <xml name="requirements">
        <requirements>
            <requirement type="package" version="2.5.2b">star</requirement>
            <requirement type="package" version="0.1.19">samtools</requirement>
        </requirements>
    </xml>
    <token name="@FASTQ_GZ_OPTION@">
        --readFilesCommand zcat
    </token>
    <xml name="citations">
        <citations>
            <citation type="doi">10.1093/bioinformatics/bts635</citation>
        </citations>
    </xml>
    <xml name="@SJDBOPTIONS@">
         <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="true" help="Exon junction information for mapping splices"/>
         <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/>
    </xml>
</macros>