Mercurial > repos > iuc > rgrnastar
view test-data/test-cache/tophat-test/genomeParameters.txt @ 29:b0f2be869d6d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit adf08f34d44da2ba5b3010a7ae3e4a7702e9b9b1
author | iuc |
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date | Wed, 14 Feb 2024 09:03:31 +0000 |
parents | 5ec75f5dae3c |
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### STAR --runMode genomeGenerate --genomeDir tempstargenomedir --genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa --genomeSAindexNbases 5 ### GstrandBit 32 versionGenome 2.7.4a genomeType Full genomeFastaFiles tools/rgrnastar/test-data/tophat_test.fa genomeSAindexNbases 5 genomeChrBinNbits 18 genomeSAsparseD 1 genomeTransformType None genomeTransformVCF - sjdbOverhang 0 sjdbFileChrStartEnd - sjdbGTFfile - sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic genomeFileSizes 262144 5366