Mercurial > repos > iuc > rgrnastar

changeset 19:44959aa06aeb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 27ea73be9aede1e0939ecd7c5f560ac2a630869a"
author iuc
date Fri, 02 Jul 2021 20:18:29 +0000
parents c772497b2c32
children 91e0f03268ca
files rg_rnaStar.xml
diffstat 1 files changed, 3 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/rg_rnaStar.xml	Mon Mar 15 13:46:07 2021 +0000
+++ b/rg_rnaStar.xml	Fri Jul 02 20:18:29 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="rna_star" name="RNA STAR" version="@VERSION@" profile="20.01" license="MIT">
+<tool id="rna_star" name="RNA STAR" version="@VERSION@+galaxy0" profile="20.01" license="MIT">
     <description>Gapped-read mapper for RNA-seq data</description>
     <xrefs>
         <xref type="bio.tools">star</xref>
@@ -210,6 +210,7 @@
 
         --outBAMsortingThreadN \${GALAXY_SLOTS:-4}
         --outBAMsortingBinsN $perf.outBAMsortingBinsN
+        --winAnchorMultimapNmax $perf.winAnchorMultimapNmax
         --limitBAMsortRAM \$((\${GALAXY_MEMORY_MB:-0}*1000000))
 
         ## Handle chimeric options and output
@@ -500,6 +501,7 @@
         </section>
         <section name="perf" title="Performance tweaks / Troubleshooting" expanded="false">
             <param argument="--outBAMsortingBinsN" type="integer" value="50" min="1" label="Number of genome bins for coordinate-sorting" help="Higher values result in lower RAM requirements during the sorting step. The default value is 50. Tweak this if you are facing memory-related errors." />
+            <param argument="--winAnchorMultimapNmax" type="integer" value="50" min="50" label="Maximum number of loci anchors are allowed to map to" help="Higher value can increase the runtime singificantly. This value should be set greater or equal to --outFilterMultimapNmax" />
         </section>
     </inputs>