Mercurial > repos > iuc > rgrnastar
changeset 27:79de45b5069b draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 65fa34f035934b4e9c1fbeb5dffe00b12e6a0f32
| author | iuc |
|---|---|
| date | Fri, 01 Sep 2023 13:17:29 +0000 |
| parents | 3ea5a2a63fa2 |
| children | 3e94726bfa9d |
| files | macros.xml rg_rnaStar.xml test-data/fakexon.Homo_sapiens.GRCh38.100.chr21.gtf test-data/no_exon.gtf test-data/rnastar_test_mapped_reads_fakexon.bam |
| diffstat | 5 files changed, 509 insertions(+), 2 deletions(-) [+] |
line wrap: on
line diff
--- a/macros.xml Mon Mar 27 16:37:27 2023 +0000 +++ b/macros.xml Fri Sep 01 13:17:29 2023 +0000 @@ -5,7 +5,7 @@ the index versions in sync, but you should manually update @IDX_VERSION_SUFFIX@ --> <!-- STAR version to be used --> <token name="@TOOL_VERSION@">2.7.10b</token> - <token name="@VERSION_SUFFIX@">3</token> + <token name="@VERSION_SUFFIX@">4</token> <token name="@PROFILE@">21.01</token> <!-- STAR index version compatible with this version of STAR This is the STAR version that introduced the index structure expected @@ -60,6 +60,7 @@ </xml> <xml name="SJDBOPTIONS"> <param argument="--sjdbGTFfile" type="data" format="gff3,gtf" label="Gene model (gff3,gtf) file for splice junctions" optional="false" help="Exon junction information for mapping splices"/> + <param argument="--sjdbGTFfeatureExon" type="text" value="exon" label="Elements to use from the gene model to use for splice junctions" help="By default and for almost all cases: 'exon', referring to finding junctions at the RNA splice sites. This can optionally be changed to allow splicing at other levels, such as 'gene', 'transcript', 'CDS'."/> <param argument="--sjdbOverhang" type="integer" min="1" value="100" label="Length of the genomic sequence around annotated junctions" help="Used in constructing the splice junctions database. Ideal value is ReadLength-1"/> </xml> <xml name="dbKeyActions"> @@ -103,15 +104,17 @@ #if str($refGenomeSource.GTFconditional.GTFselect) == 'with-gtf': --sjdbOverhang '${refGenomeSource.GTFconditional.sjdbOverhang}' --sjdbGTFfile '${refGenomeSource.GTFconditional.sjdbGTFfile}' + --sjdbGTFfeatureExon '${refGenomeSource.GTFconditional.sjdbGTFfeatureExon}' #if str($refGenomeSource.GTFconditional.sjdbGTFfile.ext) == 'gff3': --sjdbGTFtagExonParentTranscript Parent #end if #end if #else: - ## ref genome selection is less complex for STARsolo cause + ## ref genome selection is less complex for STARsolo because ## with-gtf is mandatory there --sjdbOverhang '${refGenomeSource.sjdbOverhang}' --sjdbGTFfile '${refGenomeSource.sjdbGTFfile}' + --sjdbGTFfeatureExon '${refGenomeSource.sjdbGTFfeatureExon}' #if str($refGenomeSource.sjdbGTFfile.ext) == 'gff3': --sjdbGTFtagExonParentTranscript Parent #end if @@ -137,6 +140,7 @@ #if str($refGenomeSource.GTFconditional.GTFselect) == 'without-gtf-with-gtf': --sjdbOverhang $refGenomeSource.GTFconditional.sjdbOverhang --sjdbGTFfile '${refGenomeSource.GTFconditional.sjdbGTFfile}' + --sjdbGTFfeatureExon '${refGenomeSource.GTFconditional.sjdbGTFfeatureExon}' #if str($refGenomeSource.GTFconditional.sjdbGTFfile.ext) == 'gff3': --sjdbGTFtagExonParentTranscript Parent #end if
--- a/rg_rnaStar.xml Mon Mar 27 16:37:27 2023 +0000 +++ b/rg_rnaStar.xml Fri Sep 01 13:17:29 2023 +0000 @@ -628,6 +628,44 @@ <metadata name="column_names" value="GeneID,Counts_unstrand,Counts_firstStrand,Counts_secondStrand" /> </output> </test> + <!-- Test if an alternative feature can be provided as a splicing unit. + If the splice feature set is not set correctly, + "Fatal INPUT FILE error, no exon lines in the GTF file" is expected --> + <test expect_num_outputs="4"> + <conditional name="singlePaired"> + <param name="sPaired" value="single" /> + <param name="input1" value="tophat_in2.fastqsanger" ftype="fastqsanger" /> + </conditional> + <conditional name="refGenomeSource"> + <param name="geneSource" value="history" /> + <param name="genomeFastaFiles" value="tophat_test.fa" /> + <param name="genomeSAindexNbases" value="5" /> + <conditional name="GTFconditional"> + <param name="GTFselect" value="with-gtf" /> + <param name="sjdbOverhang" value="75"/> + <param name="sjdbGTFfile" value="no_exon.gtf" ftype="gtf"/> + <param name="sjdbGTFfeatureExon" value="fakexon"/> + <conditional name="quantmode_output"> + <param name="quantMode" value="GeneCounts"/> + </conditional> + </conditional> + </conditional> + <section name="oformat"> + <param name="outSAMattributes" value="NH,HI,AS,nM,NM,MD,jM,jI,MC,ch" /> + </section> + <section name="algo"> + <conditional name="params"> + <param name="settingsType" value="default" /> + </conditional> + </section> + + <output name="output_log" file="rnastar_test.log" compare="re_match_multiline" /> + <output name="splice_junctions" file="rnastar_test_splicejunctions.bed"/> + <output name="mapped_reads" file="rnastar_test_mapped_reads_fakexon.bam" compare="sim_size" delta="634" /> + <output name="reads_per_gene" file="tophat_test_reads_per_gene.txt"> + <metadata name="column_names" value="GeneID,Counts_unstrand,Counts_firstStrand,Counts_secondStrand" /> + </output> + </test> <!-- test gtf file and TranscriptomeSAM mode --> <test expect_num_outputs="4"> <conditional name="singlePaired">
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/fakexon.Homo_sapiens.GRCh38.100.chr21.gtf Fri Sep 01 13:17:29 2023 +0000 @@ -0,0 +1,461 @@ +#!genome-build GRCh38.p13 +#!genome-version GRCh38 +#!genome-date 2013-12 +#!genome-build-accession NCBI:GCA_000001405.28 +#!genebuild-last-updated 2019-06 +21 havana gene 1000 6346 . + . gene_id "ENSG00000279493"; gene_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; +21 havana transcript 1000 6346 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 1000 1075 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760288"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana CDS 1000 1075 . + 0 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "1"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 1749 1888 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "2"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003758404"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana CDS 1749 1888 . + 2 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "2"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 3587 3672 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "3"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755466"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana CDS 3587 3672 . + 0 gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "3"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485664"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 6136 6346 . + . gene_id "ENSG00000279493"; gene_version "1"; transcript_id "ENST00000624081"; transcript_version "1"; exon_number "4"; gene_name "FP565260.4"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.4-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755385"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; 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gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl CDS 21254 21418 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl fakexon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl CDS 22609 22644 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl fakexon 29786 29867 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; exon_id "ENSE00003717023"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl CDS 29786 29814 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; protein_id "ENSP00000484302"; protein_version "1"; tag "basic"; transcript_support_level "5"; +21 ensembl stop_codon 29815 29817 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +21 ensembl five_prime_utr 11694 11880 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +21 ensembl three_prime_utr 29818 29867 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000620481"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-205"; transcript_source "ensembl"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "5"; +21 havana transcript 11732 25972 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana fakexon 11732 11894 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003755585"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 11881 11894 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana start_codon 11881 11883 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana fakexon 14210 14250 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 14210 14250 . + 1 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana fakexon 15481 15831 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003714757"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 15481 15831 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana fakexon 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 17136 17426 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana fakexon 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 21254 21418 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana fakexon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 22609 22644 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana fakexon 23783 25972 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; exon_id "ENSE00003759057"; exon_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana CDS 23783 23790 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; protein_id "ENSP00000485129"; protein_version "1"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana stop_codon 23791 23793 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; +21 havana five_prime_utr 11732 11880 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623960"; transcript_version "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-202"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86973"; tag "basic"; transcript_support_level "1 (assigned to previous version 3)"; 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gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755585"; exon_version "1"; transcript_support_level "2"; +21 havana CDS 11881 11894 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2"; +21 havana start_codon 11881 11883 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; 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gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757607"; exon_version "1"; transcript_support_level "2"; +21 havana CDS 15633 15808 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485557"; protein_version "1"; transcript_support_level "2"; +21 havana stop_codon 15809 15811 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "2"; +21 havana fakexon 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003760332"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003759504"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757428"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 23783 23885 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; exon_number "7"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755111"; exon_version "1"; transcript_support_level "2"; +21 havana five_prime_utr 11732 11880 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623903"; transcript_version "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-203"; 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transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana start_codon 11881 11883 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 14210 14250 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003742034"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 14210 14250 . + 1 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "2"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 17136 17426 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003728725"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 17136 17426 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "3"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 21254 21418 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003746700"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 21254 21418 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "4"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 22609 22644 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003753253"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 22609 22644 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "5"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 23783 25326 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760325"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana CDS 23783 23790 . + 2 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485649"; protein_version "1"; tag "basic"; transcript_support_level "2"; +21 havana stop_codon 23791 23793 . + 0 gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; exon_number "6"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana five_prime_utr 11734 11880 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana three_prime_utr 23794 25326 . + . gene_id "ENSG00000277117"; gene_version "5"; transcript_id "ENST00000623795"; transcript_version "1"; gene_name "FP565260.3"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.3-204"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "basic"; transcript_support_level "2"; +21 havana gene 62659 77068 . + . gene_id "ENSG00000279687"; gene_version "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 62659 77068 . + . gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 62659 62886 . + . gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; exon_number "1"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759048"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 76818 77068 . + . gene_id "ENSG00000279687"; gene_version "1"; transcript_id "ENST00000623188"; transcript_version "1"; exon_number "2"; gene_name "FP565260.5"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP565260.5-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759260"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 ensembl_havana gene 68495 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; +21 havana transcript 68495 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 117099 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760139"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 117099 117128 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003724593"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 110912 111004 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 68885 68935 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759383"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68885 68935 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 68495 68497 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760307"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68495 68497 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624810"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-210"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485439"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana transcript 68495 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 117099 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760139"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 117099 117128 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 68885 68935 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759383"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68885 68935 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana fakexon 68495 68497 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003760307"; exon_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana CDS 68495 68497 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000625036"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-211"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485058"; protein_version "1"; tag "cds_end_NF"; tag "cds_start_NF"; tag "mRNA_end_NF"; tag "mRNA_start_NF"; transcript_support_level "5"; +21 havana transcript 105542 116344 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 116285 116344 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003756626"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003756707"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 115080 115129 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana start_codon 115127 115129 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003754178"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003724593"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 110912 111004 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 107892 108048 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003722853"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana CDS 107892 108048 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; protein_id "ENSP00000483086"; protein_version "2"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 105542 106432 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620015"; transcript_version "4"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; exon_id "ENSE00003747879"; 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transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86974"; tag "basic"; transcript_support_level "3"; +21 ensembl_havana transcript 105542 117570 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; +21 ensembl_havana fakexon 117415 117570 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000620528"; transcript_version "5"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-202"; transcript_source "ensembl_havana"; transcript_biotype "protein_coding"; tag "CCDS"; ccds_id "CCDS86976"; exon_id "ENSE00003752103"; exon_version "3"; tag "basic"; transcript_support_level "1 (assigned to previous version 4)"; 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exon_version "1"; transcript_support_level "3"; +21 havana fakexon 109835 110312 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624748"; transcript_version "2"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-209"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003755419"; exon_version "1"; transcript_support_level "3"; +21 havana transcript 109835 117474 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana fakexon 117415 117474 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003758926"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 117415 117474 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana fakexon 117099 117151 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003727348"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 117099 117151 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759878"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003754178"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 113957 114076 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana fakexon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003724593"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 110912 111004 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana fakexon 109835 110090 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755057"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana CDS 109859 110090 . - 1 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485335"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana stop_codon 109856 109858 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; exon_number "6"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana three_prime_utr 109835 109855 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624648"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-207"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; transcript_support_level "2"; +21 havana transcript 109837 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana fakexon 117415 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003758517"; exon_version "1"; transcript_support_level "5"; +21 havana CDS 117415 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485404"; protein_version "2"; transcript_support_level "5"; +21 havana start_codon 117553 117555 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003781030"; exon_version "1"; transcript_support_level "5"; +21 havana CDS 115164 115193 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; protein_id "ENSP00000485404"; protein_version "2"; transcript_support_level "5"; +21 havana stop_codon 115161 115163 . - 0 gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "5"; +21 havana fakexon 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003755477"; exon_version "1"; transcript_support_level "5"; +21 havana fakexon 109837 110090 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; exon_id "ENSE00003760243"; exon_version "1"; transcript_support_level "5"; +21 havana five_prime_utr 117556 117614 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 115080 115160 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 110912 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana three_prime_utr 109837 110090 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623810"; transcript_version "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-205"; transcript_source "havana"; transcript_biotype "nonsense_mediated_decay"; transcript_support_level "5"; +21 havana transcript 110650 117579 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2"; +21 havana fakexon 117415 117579 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003756995"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 117099 117151 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758703"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758611"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 110650 111004 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000624714"; transcript_version "3"; exon_number "5"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-208"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003759960"; exon_version "1"; transcript_support_level "2"; +21 havana transcript 111214 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3"; +21 havana fakexon 117099 117128 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003754910"; exon_version "1"; transcript_support_level "3"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003758611"; exon_version "1"; transcript_support_level "3"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "3"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003757584"; exon_version "1"; transcript_support_level "3"; +21 havana fakexon 111214 111401 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000623390"; transcript_version "1"; exon_number "4"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-204"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003756808"; exon_version "1"; transcript_support_level "3"; +21 havana transcript 113687 114379 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; transcript_support_level "3"; +21 havana fakexon 114226 114379 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; exon_number "1"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003759301"; exon_version "1"; transcript_support_level "3"; +21 havana fakexon 113687 114076 . - . gene_id "ENSG00000280071"; gene_version "4"; transcript_id "ENST00000622915"; transcript_version "1"; exon_number "2"; gene_name "GATD3B"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "GATD3B-203"; transcript_source "havana"; transcript_biotype "processed_transcript"; exon_id "ENSE00003758934"; exon_version "1"; transcript_support_level "3"; +21 havana gene 105544 123006 . - . gene_id "ENSG00000276612"; gene_version "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; +21 havana transcript 105544 123006 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 122856 123006 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "1"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003777763"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 122856 123006 . - 2 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "1"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 122627 122701 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755072"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 122627 122701 . - 1 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "2"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 115080 115193 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003759460"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana CDS 115080 115193 . - 1 gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "3"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485630"; protein_version "2"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "3"; +21 havana fakexon 113957 114076 . - . gene_id "ENSG00000276612"; gene_version "3"; transcript_id "ENST00000623476"; transcript_version "2"; exon_number "4"; gene_name "FP565260.2"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.2-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757983"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; 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transcript_id "ENST00000634021"; transcript_version "1"; exon_number "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003783072"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 142162 142274 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782733"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 142162 142219 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana start_codon 142217 142219 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "2"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 137411 137505 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003779772"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 137411 137505 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "3"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 136980 137079 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003782084"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 136980 137079 . - 0 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "4"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 136591 136633 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003776674"; exon_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana CDS 136591 136633 . - 2 gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; exon_number "5"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000499619"; protein_version "1"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana five_prime_utr 143261 143448 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana five_prime_utr 142220 142274 . - . gene_id "ENSG00000275464"; gene_version "5"; transcript_id "ENST00000634021"; transcript_version "1"; gene_name "FP565260.1"; gene_source "ensembl_havana"; gene_biotype "protein_coding"; transcript_name "FP565260.1-208"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_end_NF"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana gene 144700 154673 . - . gene_id "ENSG00000280433"; gene_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; +21 havana transcript 144700 152896 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 152719 152896 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003756000"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana CDS 152719 152896 . - 0 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 148281 148475 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003757796"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana CDS 148281 148475 . - 2 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 144700 147960 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; exon_id "ENSE00003755430"; exon_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana CDS 147725 147960 . - 2 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; protein_id "ENSP00000485615"; protein_version "1"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana stop_codon 147722 147724 . - 0 gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana three_prime_utr 144700 147721 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623998"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-201"; transcript_source "havana"; transcript_biotype "protein_coding"; tag "cds_start_NF"; tag "mRNA_start_NF"; tag "basic"; transcript_support_level "2"; +21 havana transcript 146213 154673 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; transcript_support_level "2"; +21 havana fakexon 152719 154673 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "1"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758857"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 148281 148475 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "2"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758141"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 146213 147960 . - . gene_id "ENSG00000280433"; gene_version "1"; transcript_id "ENST00000623744"; transcript_version "1"; exon_number "3"; gene_name "FP565260.6"; gene_source "havana"; gene_biotype "protein_coding"; transcript_name "FP565260.6-202"; transcript_source "havana"; transcript_biotype "retained_intron"; exon_id "ENSE00003758852"; exon_version "1"; transcript_support_level "2"; +21 havana gene 221869 233034 . - . gene_id "ENSG00000279669"; gene_version "1"; gene_name "AC079801.1"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 221869 233034 . - . gene_id "ENSG00000279669"; gene_version "1"; transcript_id "ENST00000623753"; 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transcript_support_level "3"; +21 havana gene 488352 491743 . - . gene_id "ENSG00000279094"; gene_version "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 488352 491743 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "1"; +21 havana fakexon 491570 491743 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755185"; exon_version "1"; transcript_support_level "1"; +21 havana fakexon 489200 489302 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756104"; exon_version "1"; transcript_support_level "1"; +21 havana fakexon 488352 489010 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624261"; transcript_version "1"; exon_number "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755270"; exon_version "1"; transcript_support_level "1"; +21 havana transcript 488356 491698 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000624859"; transcript_version "3"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "3"; 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gene_biotype "lncRNA"; transcript_name "LINC01670-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755916"; exon_version "1"; tag "basic"; transcript_support_level "3"; +21 havana transcript 488758 491698 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana fakexon 491570 491698 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; exon_number "1"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759427"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 488758 489302 . - . gene_id "ENSG00000279094"; gene_version "3"; transcript_id "ENST00000623227"; transcript_version "1"; exon_number "2"; gene_name "LINC01670"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "LINC01670-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756302"; exon_version "1"; transcript_support_level "2"; +21 ensembl_havana gene 542838 604081 . + . gene_id "ENSG00000274333"; gene_version "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; +21 ensembl_havana transcript 542838 579401 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 ensembl_havana fakexon 542838 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757879"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 ensembl_havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 ensembl_havana fakexon 579220 579401 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000619252"; transcript_version "4"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-201"; transcript_source "ensembl_havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003725700"; exon_version "2"; tag "mRNA_end_NF"; transcript_support_level "2"; +21 havana transcript 542860 579379 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 542860 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758277"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 575646 575700 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758960"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 579220 579379 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623449"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-202"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758361"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana transcript 542870 579884 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana fakexon 542870 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759200"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 579220 579884 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623436"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-203"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758019"; exon_version "1"; transcript_support_level "2"; +21 havana transcript 542870 580429 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 542870 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759200"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 555326 555384 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760163"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 579220 580429 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624627"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-204"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758631"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana transcript 542880 577847 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 542880 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760225"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 568871 569009 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757773"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 574011 574176 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756099"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana fakexon 577338 577847 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624368"; transcript_version "3"; exon_number "5"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-205"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756549"; exon_version "1"; tag "basic"; transcript_support_level "5"; +21 havana transcript 542904 604081 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "5"; +21 havana fakexon 542904 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759834"; exon_version "1"; transcript_support_level "5"; +21 havana fakexon 574011 574176 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756099"; exon_version "1"; transcript_support_level "5"; +21 havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "5"; +21 havana fakexon 603953 604081 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623914"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-206"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756599"; exon_version "1"; transcript_support_level "5"; +21 havana transcript 542908 575570 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "5"; +21 havana fakexon 542908 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759216"; exon_version "1"; transcript_support_level "5"; +21 havana fakexon 575024 575570 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624516"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-207"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003760051"; exon_version "1"; transcript_support_level "5"; +21 havana transcript 542911 577987 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "1"; +21 havana fakexon 542911 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003743849"; exon_version "1"; transcript_support_level "1"; +21 havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "1"; +21 havana fakexon 577338 577987 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624412"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-208"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759693"; exon_version "1"; transcript_support_level "1"; +21 havana transcript 542918 577385 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 542918 543039 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003755533"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 574011 574264 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756887"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana fakexon 577338 577385 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000622939"; transcript_version "3"; exon_number "4"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-209"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756347"; exon_version "1"; tag "mRNA_end_NF"; transcript_support_level "3"; +21 havana transcript 555164 580435 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana fakexon 555164 555384 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757026"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 575024 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003736165"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 579220 580435 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623050"; transcript_version "1"; exon_number "3"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-210"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003759657"; exon_version "1"; transcript_support_level "2"; +21 havana transcript 571429 581205 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "1"; +21 havana fakexon 571429 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757240"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 havana fakexon 577338 581205 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000624444"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-211"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756530"; exon_version "1"; tag "basic"; transcript_support_level "1"; +21 havana transcript 572667 578729 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 havana fakexon 572667 574458 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757844"; exon_version "1"; transcript_support_level "2"; +21 havana fakexon 578548 578729 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000623887"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-212"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756828"; exon_version "1"; transcript_support_level "2"; +21 ensembl transcript 574979 581204 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; transcript_support_level "2"; +21 ensembl fakexon 574979 575188 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; exon_number "1"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; exon_id "ENSE00003717842"; exon_version "1"; transcript_support_level "2"; +21 ensembl fakexon 579220 581204 . + . gene_id "ENSG00000274333"; gene_version "4"; transcript_id "ENST00000611026"; transcript_version "1"; exon_number "2"; gene_name "CU633967.1"; gene_source "ensembl_havana"; gene_biotype "lncRNA"; transcript_name "CU633967.1-213"; transcript_source "ensembl"; transcript_biotype "lncRNA"; exon_id "ENSE00003740631"; exon_version "1"; transcript_support_level "2"; +21 ensembl gene 586591 586691 . + . gene_id "ENSG00000277777"; gene_version "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; +21 ensembl transcript 586591 586691 . + . gene_id "ENSG00000277777"; gene_version "1"; transcript_id "ENST00000610788"; transcript_version "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; transcript_name "CU633967.2-201"; transcript_source "ensembl"; transcript_biotype "misc_RNA"; tag "basic"; transcript_support_level "NA"; +21 ensembl fakexon 586591 586691 . + . gene_id "ENSG00000277777"; gene_version "1"; transcript_id "ENST00000610788"; transcript_version "1"; exon_number "1"; gene_name "CU633967.2"; gene_source "ensembl"; gene_biotype "misc_RNA"; transcript_name "CU633967.2-201"; transcript_source "ensembl"; transcript_biotype "misc_RNA"; exon_id "ENSE00003748388"; exon_version "1"; tag "basic"; transcript_support_level "NA"; +21 havana gene 692383 694838 . - . gene_id "ENSG00000279186"; gene_version "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; +21 havana transcript 692383 694838 . - . gene_id "ENSG00000279186"; gene_version "1"; transcript_id "ENST00000624506"; transcript_version "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; transcript_name "FP236315.2-201"; transcript_source "havana"; transcript_biotype "TEC"; tag "basic"; transcript_support_level "NA"; +21 havana fakexon 692383 694838 . - . gene_id "ENSG00000279186"; gene_version "1"; transcript_id "ENST00000624506"; transcript_version "1"; exon_number "1"; gene_name "FP236315.2"; gene_source "havana"; gene_biotype "TEC"; transcript_name "FP236315.2-201"; transcript_source "havana"; transcript_biotype "TEC"; exon_id "ENSE00003756739"; exon_version "1"; tag "basic"; transcript_support_level "NA"; +21 havana gene 694546 696361 . + . gene_id "ENSG00000279784"; gene_version "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 694546 696361 . + . gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 694546 694654 . + . gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; exon_number "1"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003758868"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 696164 696361 . + . gene_id "ENSG00000279784"; gene_version "1"; transcript_id "ENST00000623587"; transcript_version "1"; exon_number "2"; gene_name "FP236315.3"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.3-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003757033"; exon_version "1"; tag "basic"; transcript_support_level "2"; +21 havana gene 696205 698657 . - . gene_id "ENSG00000279064"; gene_version "1"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; +21 havana transcript 696205 698657 . - . gene_id "ENSG00000279064"; gene_version "1"; transcript_id "ENST00000623723"; transcript_version "1"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; tag "basic"; transcript_support_level "2"; +21 havana fakexon 696205 696358 . - . gene_id "ENSG00000279064"; gene_version "1"; transcript_id "ENST00000623723"; transcript_version "1"; exon_number "2"; gene_name "FP236315.1"; gene_source "havana"; gene_biotype "lncRNA"; transcript_name "FP236315.1-201"; transcript_source "havana"; transcript_biotype "lncRNA"; exon_id "ENSE00003756092"; exon_version "1"; tag "basic"; transcript_support_level "2";
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/no_exon.gtf Fri Sep 01 13:17:29 2023 +0000 @@ -0,0 +1,4 @@ +test_chromosome test gene 1 650 . + . gene_id "GENE1"; gene_name "GENE1"; transcript_id "GENE1_t1"; +test_chromosome test transcript 1 650 . + . gene_id "GENE1"; gene_name "GENE1"; transcript_id "GENE1_t1"; +test_chromosome test fakexon 1 650 . + . gene_id "GENE1"; transcript_id "GENE1_t1"; exon_number "1"; gene_name "GENE1"; +test_chromosome test CDS 100 550 . + . gene_id "GENE1"; transcript_id "GENE1_t1"; exon_number "1"; gene_name "GENE1";