Mercurial > repos > iuc > rgrnastar

changeset 14:b9e04854e2bb draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 57f71aa633a43ab02bbf05acd0c6d7f406e01f1e"
author iuc
date Thu, 28 Nov 2019 15:56:07 -0500
parents 850f3679b9b4
children 5ec75f5dae3c
files macros.xml tool_data_table_conf.xml.sample tool_data_table_conf.xml.test
diffstat 3 files changed, 6 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Fri Aug 30 08:09:05 2019 -0400
+++ b/macros.xml	Thu Nov 28 15:56:07 2019 -0500
@@ -1,8 +1,9 @@
 <macros>
     <!-- REMEMBER to bump the version of rna_star_index_builder_data_manager
     whenever you make changes to the following two version tokens!
-    The data manager uses a symlink to this macro file to keep the versions in
-    sync. -->
+    The data manager uses a symlink to this macro file to keep the STAR and
+    the index versions in sync, but you should manually adjust the +galaxy
+    version number. -->
     <!-- STAR version to be used -->
     <token name="@VERSION@">2.7.2b</token>
     <!-- STAR index version compatible with this version of STAR
@@ -18,6 +19,7 @@
         <requirements>
             <requirement type="package" version="@VERSION@">star</requirement>
             <requirement type="package" version="1.9">samtools</requirement>
+            <yield />
         </requirements>
     </xml>
 
--- a/tool_data_table_conf.xml.sample	Fri Aug 30 08:09:05 2019 -0400
+++ b/tool_data_table_conf.xml.sample	Thu Nov 28 15:56:07 2019 -0500
@@ -1,6 +1,6 @@
 <tables>
     <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, dbkey, name, path, with-gtf, version</columns>
+        <columns>value, dbkey, name, path, with_gene_model, version</columns>
         <file path="tool-data/rnastar_index2_versioned.loc" />
     </table>
 </tables>
--- a/tool_data_table_conf.xml.test	Fri Aug 30 08:09:05 2019 -0400
+++ b/tool_data_table_conf.xml.test	Thu Nov 28 15:56:07 2019 -0500
@@ -1,7 +1,7 @@
 <tables>
     <!-- Location of rnastar indexes for testing -->
     <table name="rnastar_index2_versioned" comment_char="#" allow_duplicate_entries="False">
-        <columns>value, dbkey, name, path, with-gtf, version</columns>
+        <columns>value, dbkey, name, path, with_gene_model, version</columns>
         <file path="${__HERE__}/test-data/rnastar_index2_versioned.loc" />
     </table>
 </tables>