Mercurial > repos > iuc > rgrnastar

changeset 16:e132e7d02a3e draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rgrnastar commit 9c34fd08b619a09028707a52c868d9be1ca02a6b"
author iuc
date Fri, 04 Dec 2020 22:05:07 +0000
parents 5ec75f5dae3c
children 7ed2edc1337f
files macros.xml rg_rnaStar.xml
diffstat 2 files changed, 16 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed Aug 05 09:40:33 2020 -0400
+++ b/macros.xml	Fri Dec 04 22:05:07 2020 +0000
@@ -5,7 +5,7 @@
     the index versions in sync, but you should manually adjust the +galaxy
     version number. -->
     <!-- STAR version to be used -->
-    <token name="@VERSION@">2.7.5b</token>
+    <token name="@VERSION@">2.7.6a</token>
     <!-- STAR index version compatible with this version of STAR
     This is the STAR version that introduced the index structure expected
     by the current version.
@@ -24,6 +24,16 @@
         </requirements>
     </xml>
 
+    <xml name="edam">
+        <edam_topics>
+            <edam_topic>topic_3170</edam_topic>
+            <edam_topic>topic_3308</edam_topic>
+        </edam_topics>
+        <edam_operations>
+            <edam_operation>operation_0292</edam_operation>
+        </edam_operations>
+    </xml>
+    
     <xml name="index_selection" token_with_gene_model="0">
         <param argument="--genomeDir" name="genomeDir" type="select"
         label="Select reference genome"
--- a/rg_rnaStar.xml	Wed Aug 05 09:40:33 2020 -0400
+++ b/rg_rnaStar.xml	Fri Dec 04 22:05:07 2020 +0000
@@ -1,9 +1,13 @@
-<tool id="rna_star" name="RNA STAR" version="@VERSION@" profile="17.01">
+<tool id="rna_star" name="RNA STAR" version="@VERSION@" profile="20.01" license="MIT">
     <description>Gapped-read mapper for RNA-seq data</description>
+    <xrefs>
+        <xref type="bio.tools">star</xref>
+    </xrefs>
     <macros>
         <import>macros.xml</import>
     </macros>
     <expand macro="requirements"/>
+    <expand macro="edam"/>
     <expand macro="stdio" />
 
 <!--