Mercurial > repos > iuc > rnaquast

comparison rna_quast.xml @ 6:8e66f695d859 draft

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planemo upload for repository https://git.ufz.de/lehmanju/rnaquast commit 7536270b3b51024e516b840728db6e6d0f903f69
author iuc
date Wed, 10 Jan 2024 13:24:53 +0000
parents f89e3c318453
children 3125faf00ffd
comparison
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5:f89e3c318453 6:8e66f695d859
343 <assert_contents> 343 <assert_contents>
344 <has_text text="Transcripts" /> 344 <has_text text="Transcripts" />
345 <has_size value="140" delta="5"/> 345 <has_size value="140" delta="5"/>
346 </assert_contents> 346 </assert_contents>
347 </output> 347 </output>
348
349 </test> 348 </test>
350 <!-- Test 07: Transcriptome reference, annotation, mapping and BUSCO, additional outputs--> 349 <!-- Test 07: Transcriptome reference, annotation, mapping and BUSCO, additional outputs-->
351 <test expect_num_outputs="4"> 350 <test expect_num_outputs="4">
352 <param name="transcripts" value="transcriptome01.fasta"/> 351 <param name="transcripts" value="transcriptome01.fasta"/>
353 <conditional name="gene_coordinates"> 352 <conditional name="gene_coordinates">
376 </output_collection> 375 </output_collection>
377 <output name="short_report_pdf" file="test_07_short_report.pdf" ftype="pdf" compare="sim_size" delta="1000"/> 376 <output name="short_report_pdf" file="test_07_short_report.pdf" ftype="pdf" compare="sim_size" delta="1000"/>
378 <output name="short_report_tabular" file="test_07_short_report.tab" ftype="tabular"/> 377 <output name="short_report_tabular" file="test_07_short_report.tab" ftype="tabular"/>
379 <output name="compressed_files" ftype="tgz"> 378 <output name="compressed_files" ftype="tgz">
380 <assert_contents> 379 <assert_contents>
381 <has_size value="281260" delta="250"/> 380 <has_archive_member path="./outputdir/.*" n="62" delta="0"/>
381 <has_archive_member path="./outputdir/logs/.*" n="10" delta="0"/>
382 <has_archive_member path="./outputdir/transcriptome01_output/.*" n="45" delta="0"/>
382 </assert_contents> 383 </assert_contents>
383 </output> 384 </output>
384 </test> 385 </test>
385 <!-- Test 08: Multiple inputs--> 386 <!-- Test 08: Multiple inputs-->
386 <test expect_num_outputs="6"> 387 <test expect_num_outputs="6">