Mercurial > repos > iuc > rnaspades

comparison rnaspades.xml @ 4:16e0eb91072f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rnaspades commit a66345b894a128f7cb44876cc9a51f48c5213d95"
author iuc
date Thu, 16 Sep 2021 15:25:47 +0000
parents a8a278849c18
children 1035adb112c0
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3:a8a278849c18 4:16e0eb91072f
1 <tool id="rnaspades" name="rnaSPAdes" version="3.9.0.2"> 1 <tool id="rnaspades" name="rnaSPAdes" version="3.9.0.2">
2 <description>assembler for RNA-Seq data</description> 2 <description>assembler for RNA-Seq data</description>
3 <xrefs>
4 <xref type="bio.tools">rnaspades</xref>
5 </xrefs>
3 <requirements> 6 <requirements>
4 <requirement type="package" version="3.9.0">spades</requirement> 7 <requirement type="package" version="3.9.0">spades</requirement>
5 </requirements> 8 </requirements>
6 <stdio> 9 <command detect_errors="exit_code">
7 <exit_code range="1:" />
8 </stdio>
9 <command>
10 <![CDATA[ 10 <![CDATA[
11 11
12 if [[ -n \$GALAXY_MEMORY_MB ]]; then 12 if [ -n "\$GALAXY_MEMORY_MB" ]; then
13 GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 )); 13 GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
14 fi && 14 fi &&
15 15
16 rnaspades.py -o . 16 rnaspades.py -o .
17 ## Forces unzipped output, faster 17 ## Forces unzipped output, faster