Mercurial > repos > iuc > rnaspades

changeset 4:16e0eb91072f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rnaspades commit a66345b894a128f7cb44876cc9a51f48c5213d95"
author iuc
date Thu, 16 Sep 2021 15:25:47 +0000
parents a8a278849c18
children 1035adb112c0
files rnaspades.xml
diffstat 1 files changed, 5 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/rnaspades.xml	Fri Mar 19 21:38:27 2021 +0000
+++ b/rnaspades.xml	Thu Sep 16 15:25:47 2021 +0000
@@ -1,15 +1,15 @@
 <tool id="rnaspades" name="rnaSPAdes" version="3.9.0.2">
     <description>assembler for RNA-Seq data</description>
+    <xrefs>
+        <xref type="bio.tools">rnaspades</xref>
+    </xrefs>
     <requirements>
         <requirement type="package" version="3.9.0">spades</requirement>
     </requirements>
-    <stdio>
-        <exit_code range="1:" />
-    </stdio>
-    <command>
+    <command detect_errors="exit_code">
         <![CDATA[
 
-        if [[ -n \$GALAXY_MEMORY_MB ]]; then
+        if [ -n "\$GALAXY_MEMORY_MB" ]; then
             GALAXY_MEMORY_GB=\$(( GALAXY_MEMORY_MB / 1024 ));
         fi &&