Mercurial > repos > iuc > samtools_bam_to_cram

diff samtools_bam_to_cram.xml @ 5:c2eda9a95b01 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/bam_to_cram commit c5ded4208dd70e88596ddc725795a2401773f02d"
author iuc
date Sat, 27 Nov 2021 12:31:16 +0000
parents 7d3cd2087698
children 0b663ca9a961
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--- a/samtools_bam_to_cram.xml	Tue Sep 28 16:10:21 2021 +0000
+++ b/samtools_bam_to_cram.xml	Sat Nov 27 12:31:16 2021 +0000
@@ -22,8 +22,8 @@
 	    -C
 	    -h
             -o '${output_alignment}'
-            -T '$reffa'
-            -t '$reffai'
+            -T "\$reffa"
+            -t "\$reffai"
             --output-fmt-option no_ref
             infile