Mercurial > repos > iuc > samtools_coverage

diff samtools_coverage.xml @ 5:ddbd49b892e5 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/sam_to_bam commit c508c3af0f4121dcc38e0be63db00a604e997b8a
author iuc
date Thu, 19 Jun 2025 12:58:44 +0000
parents f4f7f632815d
children
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line diff
--- a/samtools_coverage.xml	Fri May 16 12:57:31 2025 +0000
+++ b/samtools_coverage.xml	Thu Jun 19 12:58:44 2025 +0000
@@ -100,31 +100,49 @@
 
     <tests>
         <test>
-            <param name="input" value="test_1.bam" ftype="bam" />
+            <conditional name="condition_input">
+                <param name="input" value="test_1.bam" ftype="bam" />
+            </conditional>
             <output name="output" file="results_1.tabular" ftype="tabular" />
         </test>
         <test>
-            <param name="input" value="test_1.bam" ftype="bam" />
-            <param name="histogram_select" value="yes" />
-            <param name="n_bins" value="50" />
+            <conditional name="condition_input">
+                <param name="input" value="test_1.bam" ftype="bam" />
+            </conditional>
+            <conditional name="condition_histogram">
+                <param name="histogram_select" value="yes" />
+                <param name="n_bins" value="50" />
+            </conditional>
             <output name="output" file="results_2.txt" ftype="tabular" />
         </test>
         <test>
-            <param name="input_pooling" value="Yes" />
-            <param name="input_bams" value="test_1.bam,test_2.bam" ftype="bam" />
-            <param name="histogram_select" value="yes" />
-            <param name="n_bins" value="100" />
+            <conditional name="condition_input">
+                <param name="input_pooling" value="Yes" />
+                <param name="input_bams" value="test_1.bam,test_2.bam" ftype="bam" />
+            </conditional>
+            <conditional name="condition_histogram">
+                <param name="histogram_select" value="yes" />
+                <param name="n_bins" value="100" />
+            </conditional>
             <output name="output" file="results_3.txt" ftype="tabular" />
         </test>
         <test><!-- test with a region (requires index) -->
-            <param name="input" value="test_1.bam" ftype="bam" />
-            <param name="region" value="ref1" />
+            <conditional name="condition_input">
+                <param name="input" value="test_1.bam" ftype="bam" />
+            </conditional>
+            <section name="additional_options">
+                <param name="region" value="ref1" />
+            </section>
             <output name="output" file="results_4.tabular" ftype="tabular" />
         </test>
         <test><!-- test with pooled BAMs and a region -->
-            <param name="input_pooling" value="Yes" />
-            <param name="input_bams" value="test_1.bam,test_2.bam" ftype="bam" />
-            <param name="region" value="ref2" />
+            <conditional name="condition_input">
+                <param name="input_pooling" value="Yes" />
+                <param name="input_bams" value="test_1.bam,test_2.bam" ftype="bam" />
+            </conditional>
+            <section name="additional_options">
+                <param name="region" value="ref2" />
+            </section>
             <output name="output" file="results_5.tabular" ftype="tabular" />
         </test>
     </tests>