Mercurial > repos > iuc > samtools_cram_to_bam

comparison macros.xml @ 6:55ae400c0cc4 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/cram_to_bam commit 5cb103832529f17e5c72e7f122758c13519fbe5e
author iuc
date Mon, 15 Aug 2022 09:14:43 +0000
parents 634df184b2a8
children 974fe4f4e52b
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5:634df184b2a8 6:55ae400c0cc4
3 <requirements> 3 <requirements>
4 <requirement type="package" version="@TOOL_VERSION@">samtools</requirement> 4 <requirement type="package" version="@TOOL_VERSION@">samtools</requirement>
5 <yield/> 5 <yield/>
6 </requirements> 6 </requirements>
7 </xml> 7 </xml>
8 <token name="@TOOL_VERSION@">1.13</token> 8 <token name="@TOOL_VERSION@">1.15.1</token>
9 <token name="@PROFILE@">20.05</token> 9 <token name="@PROFILE@">20.05</token>
10 <token name="@FLAGS@"><![CDATA[ 10 <token name="@FLAGS@"><![CDATA[
11 #set $flags = 0 11 #set $flags = 0
12 #if $filter 12 #if $filter
13 #set $flags = sum(map(int, str($filter).split(','))) 13 #set $flags = sum(map(int, str($filter).split(',')))
101 #else 101 #else
102 #set use_ref=False 102 #set use_ref=False
103 #end if 103 #end if
104 ]]></token> 104 ]]></token>
105 105
106 <xml name="optional_reference"> 106 <xml name="optional_reference" token_help="" token_argument="">
107 <conditional name="addref_cond"> 107 <conditional name="addref_cond">
108 <param name="addref_select" type="select" label="Use a reference sequence"> 108 <param name="addref_select" type="select" label="Use a reference sequence">
109 <help>@HELP@</help> 109 <help>@HELP@</help>
110 <option value="no">No</option> 110 <option value="no">No</option>
111 <option value="history">Use a genome/index from the history</option> 111 <option value="history">Use a genome/index from the history</option>