Mercurial > repos > iuc > samtools_faidx

changeset 1:ffd1e2652813 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_faidx commit 7ba11a2aa8901b555a95e284e4fb83c8dca2833e
author iuc
date Tue, 04 Nov 2025 22:34:34 +0000
parents 91ebd197998b
children 78d6d62d4ce4
files macros.xml samtools_faidx.xml test-data/out.tabular test-data/out_fasta.tabular test-data/out_fastq.tabular test-data/samtools_fastx-out1-2.fasta.bgz test-data/samtools_fastx-out1-2.fasta.gz test-data/samtools_fastx-out1-2.fastq test-data/samtools_fastx-out1-2.fastq.bgz test-data/samtools_fastx-out1-2.fastq.gz
diffstat 10 files changed, 1323 insertions(+), 212 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Mon May 12 18:06:27 2025 +0000
+++ b/macros.xml	Tue Nov 04 22:34:34 2025 +0000
@@ -11,8 +11,8 @@
          please only bump the minor version in order to let the requirement
          version catch up eventually). To find the tools check:
         `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` -->
-    <token name="@TOOL_VERSION@">1.20</token>
-    <token name="@VERSION_SUFFIX@">2</token>
+    <token name="@TOOL_VERSION@">1.22</token>
+    <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">22.05</token>
     <token name="@FLAGS@"><![CDATA[
         #set $flags = 0
@@ -220,6 +220,7 @@
     <xml name="citations">
         <citations>
             <citation type="doi">10.1093/gigascience/giab008</citation>
+            <citation type="doi">10.1093/bioinformatics/btr076</citation>
         </citations>
     </xml>
     <xml name="version_command">
--- a/samtools_faidx.xml	Mon May 12 18:06:27 2025 +0000
+++ b/samtools_faidx.xml	Tue Nov 04 22:34:34 2025 +0000
@@ -7,29 +7,139 @@
     <expand macro="stdio"/>
     <expand macro="version_command"/>
     <command><![CDATA[
-    samtools
-        faidx
-        '$in_fasta'
-        --fai-idx '$output'
+        #set is_fastq = ("fastq" in $input.ext)
+        #if $input.ext.endswith(".gz") or $input.ext.endswith(".bgz") or $input.ext == "bgzip"
+            ln -s '$input' input.gz &&
+            samtools faidx
+            #if $is_fastq
+                --fastq
+            #end if
+                input.gz
+                --fai-idx '$output'
+                --gzi-idx input.gz.gzi
+            || (
+                echo "Failed to index compressed reference. Trying decompressed ..." 1>&2 &&
+                gzip -dc input.gz > input.plain &&
+                samtools faidx
+                #if $is_fastq
+                    --fastq
+                #end if
+                    input.plain
+                    --fai-idx '$output'
+            )
+        #else
+            ln -s '$input' input &&
+            samtools faidx
+            #if $is_fastq
+                --fastq
+            #end if
+                input
+                --fai-idx '$output'
+        #end if
     ]]></command>
     <inputs>
-        <param name="in_fasta" type="data" format="fasta,fasta.gz,fastq,fastq.gz,fastqsanger,fastqsanger.gz" label="dataset with sequences" />
+        <param name="input"
+        type="data"
+        format="fasta,fasta.gz,fastqsanger,fastqsanger.gz,fastqillumina,fastqillumina.gz"
+        label="Dataset with sequences (FASTA or FASTQ; auto-detected)" />
     </inputs>
     <outputs>
         <data name="output" format="tabular"/>
     </outputs>
     <tests>
         <test expect_num_outputs="1">
-            <param name="in_fasta" value="samtools_fastx-out1-2.fasta" />
-            <output name="output" file="out.tabular" />
+            <param name="input" value="samtools_fastx-out1-2.fasta" />
+            <output name="output" file="out_fasta.tabular" />
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fasta.gz" />
+            <output name="output" file="out_fasta.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..." />
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip"/>
+            </assert_stderr>
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fasta.bgz" />
+            <output name="output" file="out_fasta.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..." negate="true" />
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip" negate="true"/>
+            </assert_stderr>
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq" />
+            <output name="output" file="out_fastq.tabular" />
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq.gz" />
+            <output name="output" file="out_fastq.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..."/>
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip"/>
+            </assert_stderr>
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq.bgz" />
+            <output name="output" file="out_fastq.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..." negate="true"/>
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip" negate="true"/>
+            </assert_stderr>
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq" ftype="fastqsanger" />
+            <output name="output" file="out_fastq.tabular" />
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq.gz" ftype="fastqsanger.gz" />
+            <output name="output" file="out_fastq.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..." />
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip" />
+            </assert_stderr>
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq.bgz" ftype="fastqsanger.gz" />
+            <output name="output" file="out_fastq.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..." negate="true" />
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip" negate="true" />
+            </assert_stderr>
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq" ftype="fastqillumina" />
+            <output name="output" file="out_fastq.tabular" />
+        </test>
+        <test expect_num_outputs="1">
+            <param name="input" value="samtools_fastx-out1-2.fastq.gz" ftype="fastqillumina.gz" />
+            <output name="output" file="out_fastq.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..." />
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip" />
+            </assert_stderr>
+        </test>
+        <test>  
+            <param name="input" value="samtools_fastx-out1-2.fastq.bgz" ftype="fastqillumina.gz" />
+            <output name="output" file="out_fastq.tabular" />
+            <assert_stderr>
+                <has_line line="Failed to index compressed reference. Trying decompressed ..." negate="true" />
+                <has_line line="[E::fai_build3_core] Cannot index files compressed with gzip, please use bgzip" negate="true" />
+            </assert_stderr>
         </test>
     </tests>
     <help><![CDATA[
-**What it does**
+        **What it does**
+
+        Runs the ``samtools faidx`` command to index reference sequence in the FASTA format reference sequence.
+
+        If the input file is of ``fastq`` type, passes the --fastq flag to accomodate the ``samtools faidx`` command line tool.
 
-Runs the ``samtools faidx`` command to index reference sequence in the FASTA format reference sequence.
+        **Notes on compression**
+        - ``samtools faidx`` supports **BGZF-compressed** FASTA files (e.g. ``.fa.bgz`` / ``.fasta.bgz``).
+        - Plain ``.fasta.gz`` may need to be decompressed first, depending on how it was created.
 
-Full `documentation <https://www.htslib.org/doc/samtools-faidx.html>`_ for the faidx command.
+        Full `documentation <https://www.htslib.org/doc/samtools-faidx.html>`_ for the faidx command.
     ]]></help>
     <expand macro="citations"/>
 </tool>
--- a/test-data/out.tabular	Mon May 12 18:06:27 2025 +0000
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,200 +0,0 @@
-chrM_101_581_3:0:0_1:0:0_45	70	29	70	71
-chrM_317_794_1:3:0_0:1:0_18	70	129	70	71
-chrM_424_929_1:0:1_1:1:0_4a	70	229	70	71
-chrM_296_703_3:1:0_0:1:0_b	70	328	70	71
-chrM_271_788_1:2:0_0:1:0_73	70	428	70	71
-chrM_1166_1638_1:0:0_3:1:0_54	70	530	70	71
-chrM_1187_1670_2:0:0_1:1:0_5	70	631	70	71
-chrM_826_1305_2:0:0_0:0:0_63	70	732	70	71
-chrM_769_1311_4:2:0_1:0:0_9b	70	833	70	71
-chrM_946_1374_2:0:1_1:0:0_b7	70	934	70	71
-chrM_1461_2059_1:2:0_0:0:0_8f	70	1036	70	71
-chrM_1366_1837_1:0:0_0:0:0_24	70	1138	70	71
-chrM_1396_1891_4:1:0_3:0:0_55	70	1240	70	71
-chrM_1654_2097_0:1:0_1:0:0_a8	70	1342	70	71
-chrM_2195_2667_1:0:0_2:0:0_95	70	1444	70	71
-chrM_1772_2275_1:0:0_1:0:0_3f	70	1546	70	71
-chrM_2021_2595_3:0:0_2:0:0_22	70	1648	70	71
-chrM_2706_3137_0:1:0_1:0:1_af	70	1750	70	71
-chrM_2789_3314_1:0:0_0:1:0_f	70	1851	70	71
-chrM_2674_3159_3:1:0_1:1:1_e	70	1952	70	71
-chrM_3103_3621_2:1:0_1:0:0_71	70	2054	70	71
-chrM_3169_3659_1:2:0_2:0:0_68	70	2156	70	71
-chrM_2740_3253_1:1:0_1:1:0_6c	70	2258	70	71
-chrM_3187_3702_2:1:0_1:1:0_8d	70	2360	70	71
-chrM_3204_3728_0:1:0_2:2:0_4b	70	2462	70	71
-chrM_2945_3338_1:0:0_1:1:0_19	70	2564	70	71
-chrM_3289_3819_1:1:0_4:1:0_3c	70	2666	70	71
-chrM_3504_4052_0:0:0_0:2:0_b9	70	2768	70	71
-chrM_3542_4113_1:0:0_0:0:0_65	70	2870	70	71
-chrM_3560_4153_2:0:0_1:0:0_4f	70	2972	70	71
-chrM_3562_4117_0:0:0_3:0:0_51	70	3074	70	71
-chrM_3135_3669_1:2:0_1:0:0_2c	70	3176	70	71
-chrM_3422_3872_1:0:0_2:1:0_3b	70	3278	70	71
-chrM_3587_4003_0:0:0_1:1:0_a7	70	3380	70	71
-chrM_3998_4489_2:1:0_1:1:0_be	70	3482	70	71
-chrM_4007_4449_2:0:0_3:1:0_17	70	3584	70	71
-chrM_4139_4621_1:0:0_4:0:0_7e	70	3686	70	71
-chrM_4200_4733_4:0:0_0:1:0_6f	70	3788	70	71
-chrM_3799_4278_3:2:0_1:0:0_1d	70	3890	70	71
-chrM_4256_4777_1:0:0_2:2:0_66	70	3992	70	71
-chrM_3889_4361_3:0:0_3:0:0_33	70	4094	70	71
-chrM_3912_4414_3:0:0_2:1:0_91	70	4196	70	71
-chrM_3945_4422_1:2:0_0:1:0_64	70	4298	70	71
-chrM_4354_4860_0:1:0_1:0:1_b1	70	4400	70	71
-chrM_4383_4859_1:1:0_0:0:1_90	70	4502	70	71
-chrM_4425_4987_2:0:0_2:3:0_35	70	4604	70	71
-chrM_4427_4991_1:0:0_3:3:0_7	70	4705	70	71
-chrM_4480_4986_1:1:0_2:3:0_98	70	4807	70	71
-chrM_4491_4937_1:0:0_1:1:0_5e	70	4909	70	71
-chrM_4079_4594_1:0:0_3:0:0_28	70	5011	70	71
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-chrM_4627_5166_2:0:0_2:1:0_13	70	5215	70	71
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-chrM_5540_5928_2:2:0_1:0:0_2d	70	5827	70	71
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-chrM_5645_6067_1:2:0_1:3:0_1c	70	6031	70	71
-chrM_5770_6257_3:0:0_1:2:0_46	70	6133	70	71
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-chrM_5499_5905_2:3:0_1:0:0_2f	70	6336	70	71
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-chrM_5930_6421_2:3:0_1:1:0_2e	70	6642	70	71
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-chrM_6074_6685_2:0:0_0:2:0_a3	70	6846	70	71
-chrM_5831_6292_0:0:0_1:0:0_15	70	6948	70	71
-chrM_6228_6791_1:0:0_0:0:0_ae	70	7050	70	71
-chrM_6246_6734_0:0:0_1:0:0_69	70	7152	70	71
-chrM_6261_6802_2:0:0_2:0:0_87	70	7254	70	71
-chrM_5910_6386_0:2:0_1:1:0_1e	70	7356	70	71
-chrM_6356_6909_2:1:0_4:0:0_72	70	7458	70	71
-chrM_6366_6887_1:1:0_3:0:0_85	70	7560	70	71
-chrM_5959_6526_0:2:0_1:2:0_c5	70	7662	70	71
-chrM_6458_6985_2:2:0_1:0:0_b5	70	7764	70	71
-chrM_6510_7029_2:1:0_1:0:0_16	70	7866	70	71
-chrM_6138_6598_0:0:0_1:2:0_6e	70	7968	70	71
-chrM_6719_7233_1:0:0_4:1:0_b0	70	8070	70	71
-chrM_6720_7201_2:1:0_1:0:0_b8	70	8172	70	71
-chrM_6367_6804_0:1:0_1:1:0_5d	70	8274	70	71
-chrM_6845_7289_0:0:0_4:0:0_5c	70	8376	70	71
-chrM_6864_7309_1:0:0_0:0:0_a6	70	8478	70	71
-chrM_6514_6987_2:1:0_1:0:0_8	70	8579	70	71
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-chrM_7258_7724_0:1:0_0:0:0_10	70	8885	70	71
-chrM_7339_7816_1:0:0_3:4:0_43	70	8987	70	71
-chrM_6938_7424_2:0:0_1:0:0_b4	70	9089	70	71
-chrM_7188_7644_1:1:0_2:1:0_a9	70	9191	70	71
-chrM_7668_8147_1:1:1_1:2:1_6b	70	9293	70	71
-chrM_7223_7762_2:1:0_1:1:0_a1	70	9395	70	71
-chrM_7358_7894_0:0:0_1:0:1_bc	70	9497	70	71
-chrM_7550_8033_2:2:0_0:0:0_26	70	9599	70	71
-chrM_7964_8497_0:0:0_2:0:0_8c	70	9701	70	71
-chrM_7785_8278_5:1:0_2:0:0_99	70	9803	70	71
-chrM_7728_8283_1:4:0_2:0:0_1b	70	9905	70	71
-chrM_7788_8291_0:0:0_3:1:0_86	70	10007	70	71
-chrM_7835_8385_1:0:1_2:0:0_c7	70	10109	70	71
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-chrM_9038_9471_1:3:0_1:1:0_8a	70	11639	70	71
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-chrM_9897_10466_3:1:0_1:0:2_1	70	12150	70	71
-chrM_9907_10368_2:0:0_1:0:0_c2	70	12253	70	71
-chrM_9910_10411_1:1:0_0:1:2_bb	70	12356	70	71
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-chrM_10193_10658_0:2:0_1:0:0_b6	70	12666	70	71
-chrM_9735_10262_1:0:0_1:2:0_40	70	12769	70	71
-chrM_10206_10702_1:0:0_3:1:0_9e	70	12873	70	71
-chrM_10254_10719_0:0:0_1:1:0_8e	70	12977	70	71
-chrM_10023_10620_2:2:0_3:0:0_4	70	13080	70	71
-chrM_10203_10663_1:0:0_1:0:0_42	70	13184	70	71
-chrM_10362_10821_2:1:2_0:0:0_c	70	13287	70	71
-chrM_10389_10966_1:0:0_1:0:0_61	70	13391	70	71
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-chrM_11475_12014_1:1:0_2:1:0_56	70	13911	70	71
-chrM_11195_11669_2:0:0_1:0:0_49	70	14015	70	71
-chrM_11464_11999_0:1:0_3:1:0_3a	70	14119	70	71
-chrM_12174_12610_1:1:0_0:0:1_93	70	14223	70	71
-chrM_11715_12248_2:1:0_1:1:1_a0	70	14327	70	71
-chrM_12218_12618_2:1:1_1:1:0_32	70	14431	70	71
-chrM_12243_12713_2:0:0_1:0:0_bd	70	14535	70	71
-chrM_12113_12598_3:3:0_2:0:1_70	70	14639	70	71
-chrM_12064_12604_0:1:0_1:0:1_aa	70	14743	70	71
-chrM_12577_13079_0:0:0_1:1:1_11	70	14847	70	71
-chrM_12622_13091_0:0:0_3:0:1_78	70	14951	70	71
-chrM_12705_13147_4:0:0_2:0:0_94	70	15055	70	71
-chrM_12275_12781_1:0:0_1:0:1_6	70	15158	70	71
-chrM_12355_12806_0:1:0_1:0:0_6a	70	15262	70	71
-chrM_12440_12937_5:0:0_1:0:0_8b	70	15366	70	71
-chrM_12640_13011_2:0:0_2:1:0_62	70	15470	70	71
-chrM_12982_13475_3:1:0_2:0:1_75	70	15574	70	71
-chrM_12720_13279_1:0:1_2:0:0_2	70	15677	70	71
-chrM_12881_13337_0:0:0_1:1:0_89	70	15781	70	71
-chrM_13281_13783_1:1:0_1:0:0_67	70	15885	70	71
-chrM_13494_14044_3:1:0_1:1:0_7d	70	15989	70	71
-chrM_13142_13600_1:0:0_1:2:0_34	70	16093	70	71
-chrM_13326_13750_2:0:1_2:1:0_82	70	16197	70	71
-chrM_13198_13763_2:0:0_0:1:0_7c	70	16301	70	71
-chrM_13715_14154_1:0:0_1:1:0_96	70	16405	70	71
-chrM_13338_13860_2:1:1_2:0:1_4d	70	16509	70	71
-chrM_13813_14351_0:1:0_0:1:0_1f	70	16613	70	71
-chrM_13482_13976_0:0:0_1:2:0_c1	70	16717	70	71
-chrM_13910_14543_2:1:0_1:1:0_30	70	16821	70	71
-chrM_13936_14395_2:2:0_1:1:1_76	70	16925	70	71
-chrM_13940_14475_1:1:0_3:2:0_27	70	17029	70	71
-chrM_14052_14489_0:0:0_3:4:0_4c	70	17133	70	71
-chrM_14105_14613_0:0:0_2:0:0_48	70	17237	70	71
-chrM_14128_14614_0:1:0_1:1:0_97	70	17341	70	71
-chrM_14131_14628_2:1:0_2:1:0_36	70	17445	70	71
-chrM_13791_14330_0:0:0_3:0:0_29	70	17549	70	71
-chrM_13944_14351_1:1:0_0:0:0_44	70	17653	70	71
-chrM_13992_14451_1:1:0_1:3:0_52	70	17757	70	71
-chrM_14442_15026_1:2:0_3:0:0_60	70	17861	70	71
-chrM_14576_14894_2:0:0_0:0:0_5f	70	17965	70	71
-chrM_14707_15163_1:1:0_1:2:0_9	70	18068	70	71
-chrM_14728_15189_1:2:0_2:0:0_7a	70	18172	70	71
-chrM_14794_15314_1:0:0_1:0:0_c0	70	18276	70	71
-chrM_14975_15480_1:0:1_0:1:0_4e	70	18380	70	71
-chrM_15196_15749_1:1:1_2:1:0_c4	70	18484	70	71
-chrM_14768_15298_0:1:0_1:1:0_ac	70	18588	70	71
-chrM_14885_15311_3:1:0_1:0:0_3	70	18691	70	71
-chrM_14820_15346_1:0:0_0:0:0_5a	70	18795	70	71
-chrM_14858_15398_0:0:0_3:0:0_b3	70	18899	70	71
-chrM_15417_15889_0:0:0_2:0:0_50	70	19003	70	71
-chrM_14988_15504_0:0:0_1:1:0_38	70	19107	70	71
-chrM_15462_15945_2:1:0_0:0:0_0	70	19210	70	71
-chrM_15171_15615_1:0:0_0:1:0_c3	70	19314	70	71
-chrM_15361_15805_1:0:0_2:0:0_81	70	19418	70	71
-chrM_15481_15968_1:2:0_2:0:0_6d	70	19522	70	71
-chrM_15523_16020_2:1:0_1:1:0_31	70	19626	70	71
-chrM_15549_16044_0:1:0_1:1:0_59	70	19730	70	71
-chrM_15720_16131_0:1:0_2:1:0_58	70	19834	70	71
-chrM_15642_16224_2:1:0_0:0:0_a5	70	19938	70	71
-chrM_15820_16268_3:1:0_1:0:2_7f	70	20042	70	71
-chrM_13991_14484_3:1:0_3:4:0_20	70	20146	70	71
-chrM_8781_9305_4:1:0_3:0:1_3e	70	20248	70	71
-chrM_14312_14826_2:1:1_4:1:0_a4	70	20352	70	71
-chrM_408_812_0:2:1_4:2:0_ad	70	20452	70	71
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_fasta.tabular	Tue Nov 04 22:34:34 2025 +0000
@@ -0,0 +1,200 @@
+chrM_101_581_3:0:0_1:0:0_45	70	29	70	71
+chrM_317_794_1:3:0_0:1:0_18	70	129	70	71
+chrM_424_929_1:0:1_1:1:0_4a	70	229	70	71
+chrM_296_703_3:1:0_0:1:0_b	70	328	70	71
+chrM_271_788_1:2:0_0:1:0_73	70	428	70	71
+chrM_1166_1638_1:0:0_3:1:0_54	70	530	70	71
+chrM_1187_1670_2:0:0_1:1:0_5	70	631	70	71
+chrM_826_1305_2:0:0_0:0:0_63	70	732	70	71
+chrM_769_1311_4:2:0_1:0:0_9b	70	833	70	71
+chrM_946_1374_2:0:1_1:0:0_b7	70	934	70	71
+chrM_1461_2059_1:2:0_0:0:0_8f	70	1036	70	71
+chrM_1366_1837_1:0:0_0:0:0_24	70	1138	70	71
+chrM_1396_1891_4:1:0_3:0:0_55	70	1240	70	71
+chrM_1654_2097_0:1:0_1:0:0_a8	70	1342	70	71
+chrM_2195_2667_1:0:0_2:0:0_95	70	1444	70	71
+chrM_1772_2275_1:0:0_1:0:0_3f	70	1546	70	71
+chrM_2021_2595_3:0:0_2:0:0_22	70	1648	70	71
+chrM_2706_3137_0:1:0_1:0:1_af	70	1750	70	71
+chrM_2789_3314_1:0:0_0:1:0_f	70	1851	70	71
+chrM_2674_3159_3:1:0_1:1:1_e	70	1952	70	71
+chrM_3103_3621_2:1:0_1:0:0_71	70	2054	70	71
+chrM_3169_3659_1:2:0_2:0:0_68	70	2156	70	71
+chrM_2740_3253_1:1:0_1:1:0_6c	70	2258	70	71
+chrM_3187_3702_2:1:0_1:1:0_8d	70	2360	70	71
+chrM_3204_3728_0:1:0_2:2:0_4b	70	2462	70	71
+chrM_2945_3338_1:0:0_1:1:0_19	70	2564	70	71
+chrM_3289_3819_1:1:0_4:1:0_3c	70	2666	70	71
+chrM_3504_4052_0:0:0_0:2:0_b9	70	2768	70	71
+chrM_3542_4113_1:0:0_0:0:0_65	70	2870	70	71
+chrM_3560_4153_2:0:0_1:0:0_4f	70	2972	70	71
+chrM_3562_4117_0:0:0_3:0:0_51	70	3074	70	71
+chrM_3135_3669_1:2:0_1:0:0_2c	70	3176	70	71
+chrM_3422_3872_1:0:0_2:1:0_3b	70	3278	70	71
+chrM_3587_4003_0:0:0_1:1:0_a7	70	3380	70	71
+chrM_3998_4489_2:1:0_1:1:0_be	70	3482	70	71
+chrM_4007_4449_2:0:0_3:1:0_17	70	3584	70	71
+chrM_4139_4621_1:0:0_4:0:0_7e	70	3686	70	71
+chrM_4200_4733_4:0:0_0:1:0_6f	70	3788	70	71
+chrM_3799_4278_3:2:0_1:0:0_1d	70	3890	70	71
+chrM_4256_4777_1:0:0_2:2:0_66	70	3992	70	71
+chrM_3889_4361_3:0:0_3:0:0_33	70	4094	70	71
+chrM_3912_4414_3:0:0_2:1:0_91	70	4196	70	71
+chrM_3945_4422_1:2:0_0:1:0_64	70	4298	70	71
+chrM_4354_4860_0:1:0_1:0:1_b1	70	4400	70	71
+chrM_4383_4859_1:1:0_0:0:1_90	70	4502	70	71
+chrM_4425_4987_2:0:0_2:3:0_35	70	4604	70	71
+chrM_4427_4991_1:0:0_3:3:0_7	70	4705	70	71
+chrM_4480_4986_1:1:0_2:3:0_98	70	4807	70	71
+chrM_4491_4937_1:0:0_1:1:0_5e	70	4909	70	71
+chrM_4079_4594_1:0:0_3:0:0_28	70	5011	70	71
+chrM_4140_4598_2:0:0_2:0:0_12	70	5113	70	71
+chrM_4627_5166_2:0:0_2:1:0_13	70	5215	70	71
+chrM_4810_5337_0:1:0_0:3:0_9c	70	5317	70	71
+chrM_4306_4893_3:0:0_3:1:0_83	70	5419	70	71
+chrM_4842_5304_1:1:0_0:2:0_41	70	5521	70	71
+chrM_4484_4978_1:2:0_1:2:0_3d	70	5623	70	71
+chrM_4918_5435_0:2:0_1:1:0_74	70	5725	70	71
+chrM_5540_5928_2:2:0_1:0:0_2d	70	5827	70	71
+chrM_5583_6032_2:0:0_3:1:0_2b	70	5929	70	71
+chrM_5645_6067_1:2:0_1:3:0_1c	70	6031	70	71
+chrM_5770_6257_3:0:0_1:2:0_46	70	6133	70	71
+chrM_5340_5854_0:1:0_0:0:0_a	70	6234	70	71
+chrM_5499_5905_2:3:0_1:0:0_2f	70	6336	70	71
+chrM_5451_5933_2:1:0_1:1:0_57	70	6438	70	71
+chrM_5403_5984_0:0:0_1:2:0_ab	70	6540	70	71
+chrM_5930_6421_2:3:0_1:1:0_2e	70	6642	70	71
+chrM_5615_6110_2:1:0_0:3:0_14	70	6744	70	71
+chrM_6074_6685_2:0:0_0:2:0_a3	70	6846	70	71
+chrM_5831_6292_0:0:0_1:0:0_15	70	6948	70	71
+chrM_6228_6791_1:0:0_0:0:0_ae	70	7050	70	71
+chrM_6246_6734_0:0:0_1:0:0_69	70	7152	70	71
+chrM_6261_6802_2:0:0_2:0:0_87	70	7254	70	71
+chrM_5910_6386_0:2:0_1:1:0_1e	70	7356	70	71
+chrM_6356_6909_2:1:0_4:0:0_72	70	7458	70	71
+chrM_6366_6887_1:1:0_3:0:0_85	70	7560	70	71
+chrM_5959_6526_0:2:0_1:2:0_c5	70	7662	70	71
+chrM_6458_6985_2:2:0_1:0:0_b5	70	7764	70	71
+chrM_6510_7029_2:1:0_1:0:0_16	70	7866	70	71
+chrM_6138_6598_0:0:0_1:2:0_6e	70	7968	70	71
+chrM_6719_7233_1:0:0_4:1:0_b0	70	8070	70	71
+chrM_6720_7201_2:1:0_1:0:0_b8	70	8172	70	71
+chrM_6367_6804_0:1:0_1:1:0_5d	70	8274	70	71
+chrM_6845_7289_0:0:0_4:0:0_5c	70	8376	70	71
+chrM_6864_7309_1:0:0_0:0:0_a6	70	8478	70	71
+chrM_6514_6987_2:1:0_1:0:0_8	70	8579	70	71
+chrM_7046_7557_1:0:0_2:2:1_c6	70	8681	70	71
+chrM_7156_7672_2:1:0_0:0:0_53	70	8783	70	71
+chrM_7258_7724_0:1:0_0:0:0_10	70	8885	70	71
+chrM_7339_7816_1:0:0_3:4:0_43	70	8987	70	71
+chrM_6938_7424_2:0:0_1:0:0_b4	70	9089	70	71
+chrM_7188_7644_1:1:0_2:1:0_a9	70	9191	70	71
+chrM_7668_8147_1:1:1_1:2:1_6b	70	9293	70	71
+chrM_7223_7762_2:1:0_1:1:0_a1	70	9395	70	71
+chrM_7358_7894_0:0:0_1:0:1_bc	70	9497	70	71
+chrM_7550_8033_2:2:0_0:0:0_26	70	9599	70	71
+chrM_7964_8497_0:0:0_2:0:0_8c	70	9701	70	71
+chrM_7785_8278_5:1:0_2:0:0_99	70	9803	70	71
+chrM_7728_8283_1:4:0_2:0:0_1b	70	9905	70	71
+chrM_7788_8291_0:0:0_3:1:0_86	70	10007	70	71
+chrM_7835_8385_1:0:1_2:0:0_c7	70	10109	70	71
+chrM_8325_8781_1:0:0_2:0:0_9d	70	10211	70	71
+chrM_7872_8415_2:0:1_1:0:0_1a	70	10313	70	71
+chrM_7939_8482_1:1:0_2:0:0_25	70	10415	70	71
+chrM_8733_9211_0:0:0_0:0:0_47	70	10517	70	71
+chrM_8419_8906_1:0:0_3:0:0_9f	70	10619	70	71
+chrM_8886_9293_2:1:0_0:0:1_a2	70	10721	70	71
+chrM_9032_9593_1:2:1_1:0:0_b2	70	10823	70	71
+chrM_8761_9187_1:1:0_0:0:0_ba	70	10925	70	71
+chrM_9120_9714_1:1:0_0:1:0_88	70	11027	70	71
+chrM_9142_9548_1:1:0_1:2:0_77	70	11129	70	71
+chrM_9150_9818_1:1:0_1:1:0_bf	70	11231	70	71
+chrM_8863_9244_0:0:0_1:0:0_92	70	11333	70	71
+chrM_8794_9257_1:1:0_1:0:0_79	70	11435	70	71
+chrM_9222_9781_2:0:1_1:0:0_23	70	11537	70	71
+chrM_9038_9471_1:3:0_1:1:0_8a	70	11639	70	71
+chrM_9031_9522_3:3:0_2:0:0_84	70	11741	70	71
+chrM_9505_10155_3:0:0_1:0:0_9a	70	11844	70	71
+chrM_9647_10116_2:0:0_1:2:0_2a	70	11947	70	71
+chrM_9409_9920_3:1:0_1:0:0_d	70	12048	70	71
+chrM_9897_10466_3:1:0_1:0:2_1	70	12150	70	71
+chrM_9907_10368_2:0:0_1:0:0_c2	70	12253	70	71
+chrM_9910_10411_1:1:0_0:1:2_bb	70	12356	70	71
+chrM_9496_9991_0:0:0_3:1:0_80	70	12458	70	71
+chrM_10106_10577_3:1:0_2:0:0_5b	70	12562	70	71
+chrM_10193_10658_0:2:0_1:0:0_b6	70	12666	70	71
+chrM_9735_10262_1:0:0_1:2:0_40	70	12769	70	71
+chrM_10206_10702_1:0:0_3:1:0_9e	70	12873	70	71
+chrM_10254_10719_0:0:0_1:1:0_8e	70	12977	70	71
+chrM_10023_10620_2:2:0_3:0:0_4	70	13080	70	71
+chrM_10203_10663_1:0:0_1:0:0_42	70	13184	70	71
+chrM_10362_10821_2:1:2_0:0:0_c	70	13287	70	71
+chrM_10389_10966_1:0:0_1:0:0_61	70	13391	70	71
+chrM_10461_11010_1:1:0_0:0:0_21	70	13495	70	71
+chrM_11041_11475_1:0:0_1:1:0_7b	70	13599	70	71
+chrM_10767_11161_1:0:0_2:0:1_39	70	13703	70	71
+chrM_11211_11625_0:1:0_2:0:0_37	70	13807	70	71
+chrM_11475_12014_1:1:0_2:1:0_56	70	13911	70	71
+chrM_11195_11669_2:0:0_1:0:0_49	70	14015	70	71
+chrM_11464_11999_0:1:0_3:1:0_3a	70	14119	70	71
+chrM_12174_12610_1:1:0_0:0:1_93	70	14223	70	71
+chrM_11715_12248_2:1:0_1:1:1_a0	70	14327	70	71
+chrM_12218_12618_2:1:1_1:1:0_32	70	14431	70	71
+chrM_12243_12713_2:0:0_1:0:0_bd	70	14535	70	71
+chrM_12113_12598_3:3:0_2:0:1_70	70	14639	70	71
+chrM_12064_12604_0:1:0_1:0:1_aa	70	14743	70	71
+chrM_12577_13079_0:0:0_1:1:1_11	70	14847	70	71
+chrM_12622_13091_0:0:0_3:0:1_78	70	14951	70	71
+chrM_12705_13147_4:0:0_2:0:0_94	70	15055	70	71
+chrM_12275_12781_1:0:0_1:0:1_6	70	15158	70	71
+chrM_12355_12806_0:1:0_1:0:0_6a	70	15262	70	71
+chrM_12440_12937_5:0:0_1:0:0_8b	70	15366	70	71
+chrM_12640_13011_2:0:0_2:1:0_62	70	15470	70	71
+chrM_12982_13475_3:1:0_2:0:1_75	70	15574	70	71
+chrM_12720_13279_1:0:1_2:0:0_2	70	15677	70	71
+chrM_12881_13337_0:0:0_1:1:0_89	70	15781	70	71
+chrM_13281_13783_1:1:0_1:0:0_67	70	15885	70	71
+chrM_13494_14044_3:1:0_1:1:0_7d	70	15989	70	71
+chrM_13142_13600_1:0:0_1:2:0_34	70	16093	70	71
+chrM_13326_13750_2:0:1_2:1:0_82	70	16197	70	71
+chrM_13198_13763_2:0:0_0:1:0_7c	70	16301	70	71
+chrM_13715_14154_1:0:0_1:1:0_96	70	16405	70	71
+chrM_13338_13860_2:1:1_2:0:1_4d	70	16509	70	71
+chrM_13813_14351_0:1:0_0:1:0_1f	70	16613	70	71
+chrM_13482_13976_0:0:0_1:2:0_c1	70	16717	70	71
+chrM_13910_14543_2:1:0_1:1:0_30	70	16821	70	71
+chrM_13936_14395_2:2:0_1:1:1_76	70	16925	70	71
+chrM_13940_14475_1:1:0_3:2:0_27	70	17029	70	71
+chrM_14052_14489_0:0:0_3:4:0_4c	70	17133	70	71
+chrM_14105_14613_0:0:0_2:0:0_48	70	17237	70	71
+chrM_14128_14614_0:1:0_1:1:0_97	70	17341	70	71
+chrM_14131_14628_2:1:0_2:1:0_36	70	17445	70	71
+chrM_13791_14330_0:0:0_3:0:0_29	70	17549	70	71
+chrM_13944_14351_1:1:0_0:0:0_44	70	17653	70	71
+chrM_13992_14451_1:1:0_1:3:0_52	70	17757	70	71
+chrM_14442_15026_1:2:0_3:0:0_60	70	17861	70	71
+chrM_14576_14894_2:0:0_0:0:0_5f	70	17965	70	71
+chrM_14707_15163_1:1:0_1:2:0_9	70	18068	70	71
+chrM_14728_15189_1:2:0_2:0:0_7a	70	18172	70	71
+chrM_14794_15314_1:0:0_1:0:0_c0	70	18276	70	71
+chrM_14975_15480_1:0:1_0:1:0_4e	70	18380	70	71
+chrM_15196_15749_1:1:1_2:1:0_c4	70	18484	70	71
+chrM_14768_15298_0:1:0_1:1:0_ac	70	18588	70	71
+chrM_14885_15311_3:1:0_1:0:0_3	70	18691	70	71
+chrM_14820_15346_1:0:0_0:0:0_5a	70	18795	70	71
+chrM_14858_15398_0:0:0_3:0:0_b3	70	18899	70	71
+chrM_15417_15889_0:0:0_2:0:0_50	70	19003	70	71
+chrM_14988_15504_0:0:0_1:1:0_38	70	19107	70	71
+chrM_15462_15945_2:1:0_0:0:0_0	70	19210	70	71
+chrM_15171_15615_1:0:0_0:1:0_c3	70	19314	70	71
+chrM_15361_15805_1:0:0_2:0:0_81	70	19418	70	71
+chrM_15481_15968_1:2:0_2:0:0_6d	70	19522	70	71
+chrM_15523_16020_2:1:0_1:1:0_31	70	19626	70	71
+chrM_15549_16044_0:1:0_1:1:0_59	70	19730	70	71
+chrM_15720_16131_0:1:0_2:1:0_58	70	19834	70	71
+chrM_15642_16224_2:1:0_0:0:0_a5	70	19938	70	71
+chrM_15820_16268_3:1:0_1:0:2_7f	70	20042	70	71
+chrM_13991_14484_3:1:0_3:4:0_20	70	20146	70	71
+chrM_8781_9305_4:1:0_3:0:1_3e	70	20248	70	71
+chrM_14312_14826_2:1:1_4:1:0_a4	70	20352	70	71
+chrM_408_812_0:2:1_4:2:0_ad	70	20452	70	71
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/out_fastq.tabular	Tue Nov 04 22:34:34 2025 +0000
@@ -0,0 +1,200 @@
+chrM_101_581_3:0:0_1:0:0_45	70	29	70	71	102
+chrM_317_794_1:3:0_0:1:0_18	70	202	70	71	275
+chrM_424_929_1:0:1_1:1:0_4a	70	375	70	71	448
+chrM_296_703_3:1:0_0:1:0_b	70	547	70	71	620
+chrM_271_788_1:2:0_0:1:0_73	70	720	70	71	793
+chrM_1166_1638_1:0:0_3:1:0_54	70	895	70	71	968
+chrM_1187_1670_2:0:0_1:1:0_5	70	1069	70	71	1142
+chrM_826_1305_2:0:0_0:0:0_63	70	1243	70	71	1316
+chrM_769_1311_4:2:0_1:0:0_9b	70	1417	70	71	1490
+chrM_946_1374_2:0:1_1:0:0_b7	70	1591	70	71	1664
+chrM_1461_2059_1:2:0_0:0:0_8f	70	1766	70	71	1839
+chrM_1366_1837_1:0:0_0:0:0_24	70	1941	70	71	2014
+chrM_1396_1891_4:1:0_3:0:0_55	70	2116	70	71	2189
+chrM_1654_2097_0:1:0_1:0:0_a8	70	2291	70	71	2364
+chrM_2195_2667_1:0:0_2:0:0_95	70	2466	70	71	2539
+chrM_1772_2275_1:0:0_1:0:0_3f	70	2641	70	71	2714
+chrM_2021_2595_3:0:0_2:0:0_22	70	2816	70	71	2889
+chrM_2706_3137_0:1:0_1:0:1_af	70	2991	70	71	3064
+chrM_2789_3314_1:0:0_0:1:0_f	70	3165	70	71	3238
+chrM_2674_3159_3:1:0_1:1:1_e	70	3339	70	71	3412
+chrM_3103_3621_2:1:0_1:0:0_71	70	3514	70	71	3587
+chrM_3169_3659_1:2:0_2:0:0_68	70	3689	70	71	3762
+chrM_2740_3253_1:1:0_1:1:0_6c	70	3864	70	71	3937
+chrM_3187_3702_2:1:0_1:1:0_8d	70	4039	70	71	4112
+chrM_3204_3728_0:1:0_2:2:0_4b	70	4214	70	71	4287
+chrM_2945_3338_1:0:0_1:1:0_19	70	4389	70	71	4462
+chrM_3289_3819_1:1:0_4:1:0_3c	70	4564	70	71	4637
+chrM_3504_4052_0:0:0_0:2:0_b9	70	4739	70	71	4812
+chrM_3542_4113_1:0:0_0:0:0_65	70	4914	70	71	4987
+chrM_3560_4153_2:0:0_1:0:0_4f	70	5089	70	71	5162
+chrM_3562_4117_0:0:0_3:0:0_51	70	5264	70	71	5337
+chrM_3135_3669_1:2:0_1:0:0_2c	70	5439	70	71	5512
+chrM_3422_3872_1:0:0_2:1:0_3b	70	5614	70	71	5687
+chrM_3587_4003_0:0:0_1:1:0_a7	70	5789	70	71	5862
+chrM_3998_4489_2:1:0_1:1:0_be	70	5964	70	71	6037
+chrM_4007_4449_2:0:0_3:1:0_17	70	6139	70	71	6212
+chrM_4139_4621_1:0:0_4:0:0_7e	70	6314	70	71	6387
+chrM_4200_4733_4:0:0_0:1:0_6f	70	6489	70	71	6562
+chrM_3799_4278_3:2:0_1:0:0_1d	70	6664	70	71	6737
+chrM_4256_4777_1:0:0_2:2:0_66	70	6839	70	71	6912
+chrM_3889_4361_3:0:0_3:0:0_33	70	7014	70	71	7087
+chrM_3912_4414_3:0:0_2:1:0_91	70	7189	70	71	7262
+chrM_3945_4422_1:2:0_0:1:0_64	70	7364	70	71	7437
+chrM_4354_4860_0:1:0_1:0:1_b1	70	7539	70	71	7612
+chrM_4383_4859_1:1:0_0:0:1_90	70	7714	70	71	7787
+chrM_4425_4987_2:0:0_2:3:0_35	70	7889	70	71	7962
+chrM_4427_4991_1:0:0_3:3:0_7	70	8063	70	71	8136
+chrM_4480_4986_1:1:0_2:3:0_98	70	8238	70	71	8311
+chrM_4491_4937_1:0:0_1:1:0_5e	70	8413	70	71	8486
+chrM_4079_4594_1:0:0_3:0:0_28	70	8588	70	71	8661
+chrM_4140_4598_2:0:0_2:0:0_12	70	8763	70	71	8836
+chrM_4627_5166_2:0:0_2:1:0_13	70	8938	70	71	9011
+chrM_4810_5337_0:1:0_0:3:0_9c	70	9113	70	71	9186
+chrM_4306_4893_3:0:0_3:1:0_83	70	9288	70	71	9361
+chrM_4842_5304_1:1:0_0:2:0_41	70	9463	70	71	9536
+chrM_4484_4978_1:2:0_1:2:0_3d	70	9638	70	71	9711
+chrM_4918_5435_0:2:0_1:1:0_74	70	9813	70	71	9886
+chrM_5540_5928_2:2:0_1:0:0_2d	70	9988	70	71	10061
+chrM_5583_6032_2:0:0_3:1:0_2b	70	10163	70	71	10236
+chrM_5645_6067_1:2:0_1:3:0_1c	70	10338	70	71	10411
+chrM_5770_6257_3:0:0_1:2:0_46	70	10513	70	71	10586
+chrM_5340_5854_0:1:0_0:0:0_a	70	10687	70	71	10760
+chrM_5499_5905_2:3:0_1:0:0_2f	70	10862	70	71	10935
+chrM_5451_5933_2:1:0_1:1:0_57	70	11037	70	71	11110
+chrM_5403_5984_0:0:0_1:2:0_ab	70	11212	70	71	11285
+chrM_5930_6421_2:3:0_1:1:0_2e	70	11387	70	71	11460
+chrM_5615_6110_2:1:0_0:3:0_14	70	11562	70	71	11635
+chrM_6074_6685_2:0:0_0:2:0_a3	70	11737	70	71	11810
+chrM_5831_6292_0:0:0_1:0:0_15	70	11912	70	71	11985
+chrM_6228_6791_1:0:0_0:0:0_ae	70	12087	70	71	12160
+chrM_6246_6734_0:0:0_1:0:0_69	70	12262	70	71	12335
+chrM_6261_6802_2:0:0_2:0:0_87	70	12437	70	71	12510
+chrM_5910_6386_0:2:0_1:1:0_1e	70	12612	70	71	12685
+chrM_6356_6909_2:1:0_4:0:0_72	70	12787	70	71	12860
+chrM_6366_6887_1:1:0_3:0:0_85	70	12962	70	71	13035
+chrM_5959_6526_0:2:0_1:2:0_c5	70	13137	70	71	13210
+chrM_6458_6985_2:2:0_1:0:0_b5	70	13312	70	71	13385
+chrM_6510_7029_2:1:0_1:0:0_16	70	13487	70	71	13560
+chrM_6138_6598_0:0:0_1:2:0_6e	70	13662	70	71	13735
+chrM_6719_7233_1:0:0_4:1:0_b0	70	13837	70	71	13910
+chrM_6720_7201_2:1:0_1:0:0_b8	70	14012	70	71	14085
+chrM_6367_6804_0:1:0_1:1:0_5d	70	14187	70	71	14260
+chrM_6845_7289_0:0:0_4:0:0_5c	70	14362	70	71	14435
+chrM_6864_7309_1:0:0_0:0:0_a6	70	14537	70	71	14610
+chrM_6514_6987_2:1:0_1:0:0_8	70	14711	70	71	14784
+chrM_7046_7557_1:0:0_2:2:1_c6	70	14886	70	71	14959
+chrM_7156_7672_2:1:0_0:0:0_53	70	15061	70	71	15134
+chrM_7258_7724_0:1:0_0:0:0_10	70	15236	70	71	15309
+chrM_7339_7816_1:0:0_3:4:0_43	70	15411	70	71	15484
+chrM_6938_7424_2:0:0_1:0:0_b4	70	15586	70	71	15659
+chrM_7188_7644_1:1:0_2:1:0_a9	70	15761	70	71	15834
+chrM_7668_8147_1:1:1_1:2:1_6b	70	15936	70	71	16009
+chrM_7223_7762_2:1:0_1:1:0_a1	70	16111	70	71	16184
+chrM_7358_7894_0:0:0_1:0:1_bc	70	16286	70	71	16359
+chrM_7550_8033_2:2:0_0:0:0_26	70	16461	70	71	16534
+chrM_7964_8497_0:0:0_2:0:0_8c	70	16636	70	71	16709
+chrM_7785_8278_5:1:0_2:0:0_99	70	16811	70	71	16884
+chrM_7728_8283_1:4:0_2:0:0_1b	70	16986	70	71	17059
+chrM_7788_8291_0:0:0_3:1:0_86	70	17161	70	71	17234
+chrM_7835_8385_1:0:1_2:0:0_c7	70	17336	70	71	17409
+chrM_8325_8781_1:0:0_2:0:0_9d	70	17511	70	71	17584
+chrM_7872_8415_2:0:1_1:0:0_1a	70	17686	70	71	17759
+chrM_7939_8482_1:1:0_2:0:0_25	70	17861	70	71	17934
+chrM_8733_9211_0:0:0_0:0:0_47	70	18036	70	71	18109
+chrM_8419_8906_1:0:0_3:0:0_9f	70	18211	70	71	18284
+chrM_8886_9293_2:1:0_0:0:1_a2	70	18386	70	71	18459
+chrM_9032_9593_1:2:1_1:0:0_b2	70	18561	70	71	18634
+chrM_8761_9187_1:1:0_0:0:0_ba	70	18736	70	71	18809
+chrM_9120_9714_1:1:0_0:1:0_88	70	18911	70	71	18984
+chrM_9142_9548_1:1:0_1:2:0_77	70	19086	70	71	19159
+chrM_9150_9818_1:1:0_1:1:0_bf	70	19261	70	71	19334
+chrM_8863_9244_0:0:0_1:0:0_92	70	19436	70	71	19509
+chrM_8794_9257_1:1:0_1:0:0_79	70	19611	70	71	19684
+chrM_9222_9781_2:0:1_1:0:0_23	70	19786	70	71	19859
+chrM_9038_9471_1:3:0_1:1:0_8a	70	19961	70	71	20034
+chrM_9031_9522_3:3:0_2:0:0_84	70	20136	70	71	20209
+chrM_9505_10155_3:0:0_1:0:0_9a	70	20312	70	71	20385
+chrM_9647_10116_2:0:0_1:2:0_2a	70	20488	70	71	20561
+chrM_9409_9920_3:1:0_1:0:0_d	70	20662	70	71	20735
+chrM_9897_10466_3:1:0_1:0:2_1	70	20837	70	71	20910
+chrM_9907_10368_2:0:0_1:0:0_c2	70	21013	70	71	21086
+chrM_9910_10411_1:1:0_0:1:2_bb	70	21189	70	71	21262
+chrM_9496_9991_0:0:0_3:1:0_80	70	21364	70	71	21437
+chrM_10106_10577_3:1:0_2:0:0_5b	70	21541	70	71	21614
+chrM_10193_10658_0:2:0_1:0:0_b6	70	21718	70	71	21791
+chrM_9735_10262_1:0:0_1:2:0_40	70	21894	70	71	21967
+chrM_10206_10702_1:0:0_3:1:0_9e	70	22071	70	71	22144
+chrM_10254_10719_0:0:0_1:1:0_8e	70	22248	70	71	22321
+chrM_10023_10620_2:2:0_3:0:0_4	70	22424	70	71	22497
+chrM_10203_10663_1:0:0_1:0:0_42	70	22601	70	71	22674
+chrM_10362_10821_2:1:2_0:0:0_c	70	22777	70	71	22850
+chrM_10389_10966_1:0:0_1:0:0_61	70	22954	70	71	23027
+chrM_10461_11010_1:1:0_0:0:0_21	70	23131	70	71	23204
+chrM_11041_11475_1:0:0_1:1:0_7b	70	23308	70	71	23381
+chrM_10767_11161_1:0:0_2:0:1_39	70	23485	70	71	23558
+chrM_11211_11625_0:1:0_2:0:0_37	70	23662	70	71	23735
+chrM_11475_12014_1:1:0_2:1:0_56	70	23839	70	71	23912
+chrM_11195_11669_2:0:0_1:0:0_49	70	24016	70	71	24089
+chrM_11464_11999_0:1:0_3:1:0_3a	70	24193	70	71	24266
+chrM_12174_12610_1:1:0_0:0:1_93	70	24370	70	71	24443
+chrM_11715_12248_2:1:0_1:1:1_a0	70	24547	70	71	24620
+chrM_12218_12618_2:1:1_1:1:0_32	70	24724	70	71	24797
+chrM_12243_12713_2:0:0_1:0:0_bd	70	24901	70	71	24974
+chrM_12113_12598_3:3:0_2:0:1_70	70	25078	70	71	25151
+chrM_12064_12604_0:1:0_1:0:1_aa	70	25255	70	71	25328
+chrM_12577_13079_0:0:0_1:1:1_11	70	25432	70	71	25505
+chrM_12622_13091_0:0:0_3:0:1_78	70	25609	70	71	25682
+chrM_12705_13147_4:0:0_2:0:0_94	70	25786	70	71	25859
+chrM_12275_12781_1:0:0_1:0:1_6	70	25962	70	71	26035
+chrM_12355_12806_0:1:0_1:0:0_6a	70	26139	70	71	26212
+chrM_12440_12937_5:0:0_1:0:0_8b	70	26316	70	71	26389
+chrM_12640_13011_2:0:0_2:1:0_62	70	26493	70	71	26566
+chrM_12982_13475_3:1:0_2:0:1_75	70	26670	70	71	26743
+chrM_12720_13279_1:0:1_2:0:0_2	70	26846	70	71	26919
+chrM_12881_13337_0:0:0_1:1:0_89	70	27023	70	71	27096
+chrM_13281_13783_1:1:0_1:0:0_67	70	27200	70	71	27273
+chrM_13494_14044_3:1:0_1:1:0_7d	70	27377	70	71	27450
+chrM_13142_13600_1:0:0_1:2:0_34	70	27554	70	71	27627
+chrM_13326_13750_2:0:1_2:1:0_82	70	27731	70	71	27804
+chrM_13198_13763_2:0:0_0:1:0_7c	70	27908	70	71	27981
+chrM_13715_14154_1:0:0_1:1:0_96	70	28085	70	71	28158
+chrM_13338_13860_2:1:1_2:0:1_4d	70	28262	70	71	28335
+chrM_13813_14351_0:1:0_0:1:0_1f	70	28439	70	71	28512
+chrM_13482_13976_0:0:0_1:2:0_c1	70	28616	70	71	28689
+chrM_13910_14543_2:1:0_1:1:0_30	70	28793	70	71	28866
+chrM_13936_14395_2:2:0_1:1:1_76	70	28970	70	71	29043
+chrM_13940_14475_1:1:0_3:2:0_27	70	29147	70	71	29220
+chrM_14052_14489_0:0:0_3:4:0_4c	70	29324	70	71	29397
+chrM_14105_14613_0:0:0_2:0:0_48	70	29501	70	71	29574
+chrM_14128_14614_0:1:0_1:1:0_97	70	29678	70	71	29751
+chrM_14131_14628_2:1:0_2:1:0_36	70	29855	70	71	29928
+chrM_13791_14330_0:0:0_3:0:0_29	70	30032	70	71	30105
+chrM_13944_14351_1:1:0_0:0:0_44	70	30209	70	71	30282
+chrM_13992_14451_1:1:0_1:3:0_52	70	30386	70	71	30459
+chrM_14442_15026_1:2:0_3:0:0_60	70	30563	70	71	30636
+chrM_14576_14894_2:0:0_0:0:0_5f	70	30740	70	71	30813
+chrM_14707_15163_1:1:0_1:2:0_9	70	30916	70	71	30989
+chrM_14728_15189_1:2:0_2:0:0_7a	70	31093	70	71	31166
+chrM_14794_15314_1:0:0_1:0:0_c0	70	31270	70	71	31343
+chrM_14975_15480_1:0:1_0:1:0_4e	70	31447	70	71	31520
+chrM_15196_15749_1:1:1_2:1:0_c4	70	31624	70	71	31697
+chrM_14768_15298_0:1:0_1:1:0_ac	70	31801	70	71	31874
+chrM_14885_15311_3:1:0_1:0:0_3	70	31977	70	71	32050
+chrM_14820_15346_1:0:0_0:0:0_5a	70	32154	70	71	32227
+chrM_14858_15398_0:0:0_3:0:0_b3	70	32331	70	71	32404
+chrM_15417_15889_0:0:0_2:0:0_50	70	32508	70	71	32581
+chrM_14988_15504_0:0:0_1:1:0_38	70	32685	70	71	32758
+chrM_15462_15945_2:1:0_0:0:0_0	70	32861	70	71	32934
+chrM_15171_15615_1:0:0_0:1:0_c3	70	33038	70	71	33111
+chrM_15361_15805_1:0:0_2:0:0_81	70	33215	70	71	33288
+chrM_15481_15968_1:2:0_2:0:0_6d	70	33392	70	71	33465
+chrM_15523_16020_2:1:0_1:1:0_31	70	33569	70	71	33642
+chrM_15549_16044_0:1:0_1:1:0_59	70	33746	70	71	33819
+chrM_15720_16131_0:1:0_2:1:0_58	70	33923	70	71	33996
+chrM_15642_16224_2:1:0_0:0:0_a5	70	34100	70	71	34173
+chrM_15820_16268_3:1:0_1:0:2_7f	70	34277	70	71	34350
+chrM_13991_14484_3:1:0_3:4:0_20	70	34454	70	71	34527
+chrM_8781_9305_4:1:0_3:0:1_3e	70	34629	70	71	34702
+chrM_14312_14826_2:1:1_4:1:0_a4	70	34806	70	71	34879
+chrM_408_812_0:2:1_4:2:0_ad	70	34979	70	71	35052
Binary file test-data/samtools_fastx-out1-2.fasta.bgz has changed
Binary file test-data/samtools_fastx-out1-2.fasta.gz has changed
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/samtools_fastx-out1-2.fastq	Tue Nov 04 22:34:34 2025 +0000
@@ -0,0 +1,800 @@
+@chrM_101_581_3:0:0_1:0:0_45
+GAGGTAAAATTACACATGCAAACCTCCATAGACCGGAGAAAAATCCCTTAAAGATTTACTTAAAATTTAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_317_794_1:3:0_0:1:0_18
+CTCGGTCATACGATTAACCCAAACTAAATATTTTCGGCGTAAAACGTGTCATCTATAAATAAATAAATAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_424_929_1:0:1_1:1:0_4a
+GGACCTAAACCGTCAATAACGAAAGTAATTCTAGTCATTTATAATCCACGACAGCTAAGACCCAAACTGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_296_703_3:1:0_0:1:0_b
+GGGTTTGCTGAAGATGGCGGTATATAGGCTGAATTAGCAAGTGATGGTGAGGTAGAGCGGGGTTTATCGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_271_788_1:2:0_0:1:0_73
+TAGCCCATTTCTTCCCATTGCATTGGCTACACCTTGACCTAACGTTTTTATGTTTGATTCTTTTGCTTAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_1166_1638_1:0:0_3:1:0_54
+AGAATTGGAGAAAGAAATTCGTACATCTAGGAGCTATAGAACTAGTACCGCAAGGGAAAGATGAAAGACT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_1187_1670_2:0:0_1:1:0_5
+TACATCTAGGAGCTATAGAACTAGAACCGCAAGGGAAAGATGAAAGCCTAATTAAAAGTAAGAACAAGCA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_826_1305_2:0:0_0:0:0_63
+AGAAGTTTTCTAGTTAGTTCATTATGCAAAAGGTACAAGGTTTAATCTTTGCTTGTTCTTACTTTTAATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_769_1311_4:2:0_1:0:0_9b
+CAAAGGGAAGACATGGGGTACATTTTCTTATAACAGAACATTACTATCCCCTTTATGAAACTAAAGGACT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_946_1374_2:0:1_1:0:0_b7
+GTTGATTCATAAAATTGTTTTTAGGTAGGTCGTTTGGTTTCGGGGTTTCTAGCTGTAATTCTTTTAGTTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_1461_2059_1:2:0_0:0:0_8f
+GAATTTAAGTTCAATTATAAACTTGCTGAAAAAAGAACAAAATCAAAAAGTAAGTTTAGATTATAGCCAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_1366_1837_1:0:0_0:0:0_24
+ATTTATAGTGTGATTATTGCCTATAGTCTGATTAACTAACAATGGTTATCCGAGTTGTTATACGCGTATG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_1396_1891_4:1:0_3:0:0_55
+GAGAAGATTTTTAGGTAGAGGTGAAACGCCTACCGAGCTTGTTGATAGCTTGTTACCCAAAAAGTGAATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_1654_2097_0:1:0_1:0:0_a8
+AGAGACAGTTGGACCCTCGTTTAGCCGTTCATGCTAGTCCCTAATTAAGGACCAAGTGATTATGCTACCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_2195_2667_1:0:0_2:0:0_95
+TTTAATTTATTAAACCTAATGGCCCAAAAACTATAGTCTAAGTTTGAAATTTCGGTTGGGGTGACCTCGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_1772_2275_1:0:0_1:0:0_3f
+ATTTTTATTCTCCGAGGTCACCCCAACCGAAATTTCAAACTTATACTATAGTTTTTGGGCCATTAGGTTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_2021_2595_3:0:0_2:0:0_22
+AAGGTGGCTCTATTTCTCTTGACCTTTCGTACTGGGAGAAATCGTAAATAGATAGAAACCGACCAGGATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_2706_3137_0:1:0_1:0:1_af
+AGACTTAAAACCTTGTTCCCAGAGGTTCAAATCCTCTCCCTAATAGTGTTCTTTATTATTATCCTAACAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_2789_3314_1:0:0_0:1:0_f
+TCTAATCGCCATAGCCTTCCTCACATTAGTAGAACGCAAAATCTTAGGGTACATACAACTACGAAAAGGC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_2674_3159_3:1:0_1:1:1_e
+CTACGGCTCGTAAAGCTCCGATTAGTGAGAATTTGGAGTTTGAGGCTCATCCTGATCAAGAATGGAGTAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3103_3621_2:1:0_1:0:0_71
+GATCAGGATGATCCTCAAACTCCAAATCCTCACTAATCGGAGCTTTACGAGCCGTAGCCCAAACAATTTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3169_3659_1:2:0_2:0:0_68
+TTTCATATGATGTAACCATAGCTATTATCCTTTTAACAGTTCTATTAATAAATGGATTCTACTCTCTACA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_2740_3253_1:1:0_1:1:0_6c
+GTTGTAATAAGTGTTTTTAGAGAGTAGAATCCATTTATTAATAGAACTGATAAAAGGATAATAGCTATGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3187_3702_2:1:0_1:1:0_8d
+TAGCTATTCTCCTTTTATCAGTTCTATTAATAAATGGATTCTACTCTCTACAAACACTTATTACAACCGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3204_3728_0:1:0_2:2:0_4b
+TCAGTTCTATTAATAAATGGATTCTACTCTCTACAAACACTTATTACAACCCAAGAACACATATGATTAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_2945_3338_1:0:0_1:1:0_19
+GGCCCGGTTTGTTTCTGCTAGGGTTGAGATATATCATATTATGGCTATGGGTCAGGCTGGCAGACGTAAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3289_3819_1:1:0_4:1:0_3c
+CCAAAGCCATAATATGATATATCTCAACCCTAGCAGAAACAAACCGGGCCCCCTTCGACCTGACAGAAGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3504_4052_0:0:0_0:2:0_b9
+CCAGAACTCTACTCAACTAACTTCATAATAGAAGCTCTACTACTATCATCAACATTCCTATGGATCCGAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3542_4113_1:0:0_0:0:0_65
+ACTACTATCATCAACATTCCTATGGATCCGAGCATCTTATCGACGCTTCCGTTACGATCAACTTATACAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3560_4153_2:0:0_1:0:0_4f
+CCTATGGATCCGAGCATCTTATGCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3562_4117_0:0:0_3:0:0_51
+TATGGATCCGAGCATCTTATCCACGCTTCCGTTACGATCAACTTATACATCTTCTATGAAAAAACTTTCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3135_3669_1:2:0_1:0:0_2c
+AAGAAATATGTCACATACATAATGCTAGAGTTAGGGGTAGAAAGTTTTTTCATAGAAGATGTATAAGTTG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3422_3872_1:0:0_2:1:0_3b
+CCCTATAGCTTAATTAGCTGACCTTAGTATTAGGATAAGGTGTTTAGGTAGCAAGGAGAATTTTGAATTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3587_4003_0:0:0_1:1:0_a7
+TCATATCAGTATTAGGTTGGTGCTGGATATTGTGATTACAGGACCTAATAAGATTGTGAAGTAGATGATG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3998_4489_2:1:0_1:1:0_be
+ATATGAGAAGGCCTGGAATTCCGCCAACTAGCAATTATCCCCATACTAATCAACAAAAAAAACCCACGAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4007_4449_2:0:0_3:1:0_17
+GTCCTGGAATTCAGCCTACTAGCACTTATCCCCATACTAATCAACAAAAAAAACCCACGATCAACTGAAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4139_4621_1:0:0_4:0:0_7e
+CTCAACTATAAACAACTAGGAACATGAATATTTCAACAACAAACAAACTGTCTTATCCTTAACATAACAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4200_4733_4:0:0_0:1:0_6f
+ACATCAGATTAATAGCCCTAACCATAAAACTAGGCCTCGCCCCATTCCACTACTGATTACCAGAAGTAAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3799_4278_3:2:0_1:0:0_1d
+TTAAGAATTCAAAATTCTGCTAGCTACCAAAACACCTTATCCTGATAGTAAGGTCAGCTAATTAAGCTAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4256_4777_1:0:0_2:2:0_66
+TTACCAGAAGTAACTCAAGGGATCCCACTGCACATAGGACTTATTCTTGTTACATGACAAAAAATTGCTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3889_4361_3:0:0_3:0:0_33
+TGAGTAGCGGGTAAATTTGACTTAAAATTGAAAGGGGCGCAATTTTTTGTCATGTAAGAAGAATAAGTCC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3912_4414_3:0:0_2:1:0_91
+TCATGCCCCAATGAAAATAGAAGTAAATGCTAGTATTAAAATGATAGTAGAGTTGAGTATCGGGTAAATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_3945_4422_1:2:0_0:1:0_64
+AGTCCTCCTCATGCCCCAATGAAAATAGAAGTAATTGCTAGTATTAAAATGATAGTAGAGTTGAGTAGCG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4354_4860_0:1:0_1:0:1_b1
+GCTACTCAACTCTACTATCATTTTAATACTAGCAATTACTTCTATTTTCATAGGGGCATGAGGAGGATTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4383_4859_1:1:0_0:0:1_90
+TAGCAATTACTTCTATTTTCATAGGGGCATTAGGAGGATTTAACCAAACACAAATACGAAAAATTATAGC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4425_4987_2:0:0_2:3:0_35
+GCTTTGATTGCTCGCGGACTGGTAAATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTAGGGGTAGGGTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4427_4991_1:0:0_3:3:0_7
+CAAACACAAATACGAAAAATTATAGCCTATTCATCAATTGCCCACCTAGGATGAATATTAGCAATTCTTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4480_4986_1:1:0_2:3:0_98
+AAAATTAGCAATTCTTCCTTACAACCCATCCCTCACTCTACTCAACCTCATAATGTATATTATTCTTACA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4491_4937_1:0:0_1:1:0_5e
+TTCTTCCTTACAACCCATCCCTCACTCAACTCAACCTCATAATCTATATTATTCTTACAGCCCCTATATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4079_4594_1:0:0_3:0:0_28
+GATGGTTATAGCGTTATTTAGTATAAGTGCTATGAATCTAGGGGCTGTAAGAATCATATAGATTATGAGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4140_4598_2:0:0_2:0:0_12
+AGATGATGGTTATAGAGTTATTTAGTATAAGTGCTATGAATAAAGGGGCTGTAAGAATAATATAGATTAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4627_5166_2:0:0_2:1:0_13
+AGCAATACTACCTATAATCTCAGTGATATTACTATCCCTAGGAGGCCTTCCACCACTAACAGGATTCTTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4810_5337_0:1:0_0:3:0_9c
+CACTTCACTAACAATATTTCCAACCAACAATAACTCAAAAATAATAACTCACCAAACAAAAACTAAACCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4306_4893_3:0:0_3:1:0_83
+GAAAATATTAGGTTATGTTTAGTTTTTGTTTGGTGAGTTATTAATTTTGAGTTATTGTTGGTTGGCAATA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4842_5304_1:1:0_0:2:0_41
+CCTCAAAAATAATAACTCACCAAACAAAAACTAAACCTAACCTAATATTTTCCACCCTAGCTATCATAAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4484_4978_1:2:0_1:2:0_3d
+GCTCGCGGACTGGTATATCCTAACCTTCTAGGTAATTAGTTGGGGGGCTCGGGGTAGGGTTATTGTGCTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_4918_5435_0:2:0_1:1:0_74
+TAAAATACTTAGTGCAGTACCCACTATTCCCGCTCAGGCTCCGAATAGTAGAAAGAGGGTTCGGATATCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5540_5928_2:2:0_1:0:0_2d
+ACCAATAATAATTGGTGGCTTTGGCAACTGACTTGTCCCACTAATAATCGTAGCCCCAGATATAGCATTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5583_6032_2:0:0_3:1:0_2b
+ATACTCGGAGCCCCAGATATAGCATTCCCACGAATAAATAATATAAGTTTTTGAGTCCTACCACCATCAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5645_6067_1:2:0_1:3:0_1c
+ACCATCATTTCTCCTTCTCCTAGCATCATCAATAGTAGAGGCAGGAGTAGGAACATGATGAACAGTCTAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5770_6257_3:0:0_1:2:0_46
+TCTCCCTTCATTTAGCAGGAGTGTCATCTATTTTAGGTGCAATTACTTTTATTACCACTATTCTCAACAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5340_5854_0:1:0_0:0:0_a
+ATGGCTGGGGGTTTCATGTTGATAATAGTGGTAATAAAATTAATTGCACCTAAAATAGATGACACTCCAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5499_5905_2:3:0_1:0:0_2f
+ACGGGTGTAATAAGTACGGATCAGACAAATAGTGGAGTTTGATACTGTGTTATGGCTGGGGGTTTCATGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5451_5933_2:1:0_1:1:0_57
+TAACACTTGTAGTGATAATAGGAGCAGTACGGCTGTAATAAGTACGGATCAGACAAATAGTGGAGTTTGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5403_5984_0:0:0_1:2:0_ab
+GAAAGTTTTGTTTAGGTTGCGGTGTGTTAGTAGTATAGTAATGCCTGCGGCTAACACTGGTAGTGATAAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5930_6421_2:3:0_1:1:0_2e
+GTTAGCCGCAGGCATTACTATACTACTACCAGACCGCAACCTAAACACAACTTTCTTTGATCCCGCGGGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5615_6110_2:1:0_0:3:0_14
+GTAGTAAGTAACTACATGTGAAATAATTCCAAATCCTGGGAGGATAAGAAAAAAAACTTCTGGGTGCCCC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6074_6685_2:0:0_0:2:0_a3
+AGGATTTGGAATTATTTCACATGTAGTTACTTACTACTCCGGCAACAAAGAACCTTTCGGCTATATAGGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5831_6292_0:0:0_1:0:0_15
+CTAAATACTTTGACACCGGTAGGACTTGCGATAATTATAGTGGCTGATGTAAAGTAAGCTCGTGTGTCTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6228_6791_1:0:0_0:0:0_ae
+ACACGAGCTTACTTTACATCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTAAGCTGAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6246_6734_0:0:0_1:0:0_69
+TCAGCCACTATAATTATCGCAATTCCTACCGGTGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6261_6802_2:0:0_2:0:0_87
+ATGGCAATTCCTACCGGAGTCAAAGTATTTAGCTGACTTGCAACCCTACACGGAGGTAATATTAAATGAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5910_6386_0:2:0_1:1:0_1e
+TAGACCACCAACTGTAAATAAGAAAATAAAGCCTAAGGCTCATAGTATAGCTGGAGATCAGTTAAAATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6356_6909_2:1:0_4:0:0_72
+CTTTATTTTCTTATTTACCGTTGGTGGTCTAACCGTAATTGCTTTATCCAACTCATCCCTTGACATCGTG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6366_6887_1:1:0_3:0:0_85
+TTATTTACAGTTGGTGGTCTAACCGTAATTGCTTTATCCAACTCATCCCTTGACATCGTGCTTCACGATA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_5959_6526_0:2:0_1:2:0_c5
+AATAATGTGAATCAGTGAACAAATCCTGCTATGATAGCAAACACTCCTCCCATTGATGGAACATAGTGGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6458_6985_2:2:0_1:0:0_b5
+CCACTATGTTCCATCAATGGGAGGAGTGTTTGCAATCATAGCAGGATTTGTTCACAGATTCCCATTATTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6510_7029_2:1:0_1:0:0_16
+CACTGATTCCCATTATTTTCCGGGTTCACCCTAGATGACACATGAGCAAAAGCCCACTTCGCCTTCATAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6138_6598_0:0:0_1:2:0_6e
+GTTATGTTCACTCCTACGAATATGAAGTCGAAGTGGGCTTTTGCTCATGTGTCATCTAGGGTGAAGCCTG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6719_7233_1:0:0_4:1:0_b0
+TGTTCTCATCATGATCTTTATAATTTGAGAGGCCTTTGCTTCAAAACGATAAGTAATATCAGTATCGTAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6720_7201_2:1:0_1:0:0_b8
+TTTCTCATCATGATCTTTATAATTAGAGAGGCCTTTGCTTCAAAACGATAAGTAATATCAGTATCGTATG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6367_6804_0:1:0_1:1:0_5d
+CTAAATTTGTTGAATCATACGATACTGATATTACTTATCGTTTTGAAGCAAAGGCCTCTCAAATTATAAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6845_7289_0:0:0_4:0:0_5c
+GGAACCAACCTATGTAAAAGTAAAATAAGAAAGGAAGGAATCGAACCCCCTAAAATTGGTTTCAAGCCAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6864_7309_1:0:0_0:0:0_a6
+GTAAAATAAGAAAGGAAGGAATCGAACCCCCTAAAATTGGTTTCAAGCCAATCTCATATCCTATCTGTCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6514_6987_2:1:0_1:0:0_8
+TAATTTAACTTTGACAAAGTTATGTAATTGATTTTACTAATATCTTATTGAGAAAGACATATCGGATATG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7046_7557_1:0:0_2:2:1_c6
+GCCACATCCCCTATTATAGAAGAGCTAATAAATTTCCATGATCACACACTAATAATTGTATTCCTAATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7156_7672_2:1:0_0:0:0_53
+AAACCTAACACATACAAGCACAATAGATGCACTAGAAGTTGAAACCATTTGAACTATTGTACCAGCTGTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7258_7724_0:1:0_0:0:0_10
+CATTCTATATATAATAGACGAAATCAACAACCCCTTATTAACCGTTAAAACCATAGGGCACCAATGATAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7339_7816_1:0:0_3:4:0_43
+AATTGATGAGATAATTGTGATAATTCATGTTGAAGTATCTAGTTGTGGGTTAGCACAATGGAGATTTTAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_6938_7424_2:0:0_1:0:0_b4
+CTTCTAGCAGTCGTAGTTCACCAGGTTTTCGGTCGTTTGTTGGGATTATATATGAATCAAAGCATAGGTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7188_7644_1:1:0_2:1:0_a9
+AGGACAATGGGCATAAAGCTATGGTTCGATCCACAAATTTCAGAGCATTGGCCATAGAATAACCCTGGTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7668_8147_1:1:1_1:2:1_6b
+TCGAAAACTGATCTGCTTCAATCATTTAATTTCACTATGAAGCTAAGAAGCGTTAACCTTTTAAGTTAAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7223_7762_2:1:0_1:1:0_a1
+ACAATGGAGATATTAAGGTCTCTAACTTTAACTTAAAAGGTTAACGCTCTTAGCTTCATAGTGAAATTAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7358_7894_0:0:0_1:0:1_bc
+TTTTAGGATTTTGGTGAAGGTGCCAGTGGGAATGTTTGTGATGAGACTTTTAGTTGAAATAAGATAAATA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7550_8033_2:2:0_0:0:0_26
+AATCAAGCAACAGCAACATCCAACGGACCCGGGTTATTCTATGGCCAATGCTCTGAAATTTGTGGATCTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7964_8497_0:0:0_2:0:0_8c
+CAATAATAGGATTCCCAATCGTTGTAGCCATCATTATATTTCCTTCAATCCTATTCCCATCCTCAAAACG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7785_8278_5:1:0_2:0:0_99
+GGAAGCCTGTAATTACGGCTGCAGCTCATAGTGGAATGGCTATACTTAGATTTATGGATATTTGGGTAGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7728_8283_1:4:0_2:0:0_1b
+GTGTCGGAAGCCTGTAATTACGGCTCCATCTCCTAGTGGAATGGCTATACTTAGATTTATGGATAGTTGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7788_8291_0:0:0_3:1:0_86
+TTAAGTTTGTGTCGGAAGCCTGTAATTAGGGCTCCAGCTCATAGGGGAATGTCTATACTTAGATTTATGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7835_8385_1:0:1_2:0:0_c7
+TGGTAGAATAAATAGGCTAATTGTTTCAATAATAATAATTATTGGAATTAGTGAAATTGGAGTTCCTTGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8325_8781_1:0:0_2:0:0_9d
+TCCAATTTCACTAATTCCAATACTTATTATAATTGAAACAATTAGCCTATTTATTCAACCAATGGCATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7872_8415_2:0:1_1:0:0_1a
+GTTAGCTGTAAGCCGGACTGCTAATGCCATTGGTTGAATAAATAGGCTAATTGTTTCAATCATAATAAGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_7939_8482_1:1:0_2:0:0_25
+GGCTAATATTTATTAATACTAGAGTAGCTCCTCCGATTATGTGTATTAATAAGTGTCCTGCAGAAATGTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8733_9211_0:0:0_0:0:0_47
+TTAACCCTTGGCCTACTCACCAATATCCTCACAATATATCAATGATGACGAGACGTAATTCGTGAAGGAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8419_8906_1:0:0_3:0:0_9f
+CGGTGAGAAGAATGCTGCAAAGAAAAATACTTCCGAGACGATGAATAGAATTATACCATATCGTAGTCCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8886_9293_2:1:0_0:0:1_a2
+TTTGGAGGATTCTTCTGAGCGTACTATCATTATAGCCTCGTACCAACACATGATCTAGGAGGCTGCTGAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9032_9593_1:2:1_1:0:0_b2
+TTCATTACATGACCTCATTATAGCCTTATAGAAGGTAAACGAAACCACATAAAACAAGCCCTACTAATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8761_9187_1:1:0_0:0:0_ba
+CCATAGATACCATCTGAAATGGAGAATGATGTTTCAAAGTATTCTGAAGCTTGGAGGATGGTGAAGTAAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9120_9714_1:1:0_0:1:0_88
+TACTTCACCATCCTCCAAGCTTCAGAATACATTGAAACACCATTCTCCATTTCAGATGGTATCTATGGTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9142_9548_1:1:0_1:2:0_77
+CAGAATACTTTGAAACACCATTCTCGATTTCAGATGGTATCTATGGTTCTACATTCTTCATGGCTACTGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9150_9818_1:1:0_1:1:0_bf
+TTTGAAACACCATTCTCCATTTCAGATGGTATCTAAGGTTCTACATTCTTCATGGCTACTGGATTCCATG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8863_9244_0:0:0_1:0:0_92
+GTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGCACCATAGATACCAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8794_9257_1:1:0_1:0:0_79
+AAGAATAAGGAATGTTGATCCAATAATTACATGGAGTCCATGGAATCCAGTAGCCATGAAGAATGTAGAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9222_9781_2:0:1_1:0:0_23
+CTCCATGTAATTATTGGATCAACATTCCTTCTAGTTTGCCTACTAGACAACTAAAATTTCACTTCACATC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9038_9471_1:3:0_1:1:0_8a
+TGTACAGGTTAATTACTCTGTTCTGGGTTTATTCAGAATCTACTAATTGGAAGTCAGTTCTATTAATTAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9031_9522_3:3:0_2:0:0_84
+ATGGAACTAGAATTAGCGTTAGGGATAATAAAATATTAATGAAGATAACAGTGTACATGTTAATTACTCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9505_10155_3:0:0_1:0:0_9a
+CGCTACTTCTAGTTGCATTCTGACTCCCCCAAATACATCTGTCCTCAGAAAAAGCAAATCCATATGAATG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9647_10116_2:0:0_1:2:0_2a
+ATTATTTGACCTAGCAATTGCTCTTCTACTTCCACTACCATGAGCAATTCAAACAATTAAAACCTGTACT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9409_9920_3:1:0_1:0:0_d
+GATAGAGAGAAGGCTATGGTGAGGTTGAAGAAGGTAGATGGCATATTGGTAATTATGAACATCATCATAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9897_10466_3:1:0_1:0:2_1
+CCTCACCATAGCCTTCTCACTATCACTACTAGGAACACTTATATTTCGCTCACACCTCATATCCACATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9907_10368_2:0:0_1:0:0_c2
+GCCTTCTCACTATCCCTTCTAGGGACACTTATATTTCGCTCTCACCTAATATCCAGATTACTATGCCTGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9910_10411_1:1:0_0:1:2_bb
+TTCTCACTATCACTTCTAGGAACACTTATATTTCGCTCTCACCTAATATCCACATTACTATGCCAGGAAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9496_9991_0:0:0_3:1:0_80
+CTAATACTATGCCTTCCAGGCATAGTAAAGTGGATATTAGGTGAGAGCGAAATCTAAGTGTTCCTAGAAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10106_10577_3:1:0_2:0:0_5b
+AACTAGTAAAAGTTTCAAACACGAACGGAACAGATTACGTCCAAAATCTCAACCTGCTACAATGGTAAAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10193_10658_0:2:0_1:0:0_b6
+AATGCTACTCCCACTAACCTGACTATCAAGCCCTAAAAAAACCTGCACAAACGTAACCTCATATAGTTTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_9735_10262_1:0:0_1:2:0_40
+AAAACTATATGAGGTTACGTTTGTGCAGGTATTTTTAGGGCTTGATAGTCAGGTTAGTGGGAGTAGCATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10206_10702_1:0:0_3:1:0_9e
+CTAACCTTACTATCAAGCCCTAAAAAAACCTGAACAAACGTAACCTCATATAGTTTTCTAATTAGTTTAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10254_10719_0:0:0_1:1:0_8e
+TATAGTTTTCTAATTAGTTTAACCAGCCTAACACTTCTATGACAAACCGACGAAAATTATAAAAACTTTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10023_10620_2:2:0_3:0:0_4
+AAACTCCAACTCCATAAGCTCCATACCATTCCCCATCACGATCGTAGTTATCGCAGCCTGCGAAGCAGCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10203_10663_1:0:0_1:0:0_42
+AAGATGAGGGCAATTAGCAGTGGAATAGAACCGATTCGGGTATAAAATAGGAAATAAATCCCTGCGTTTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10362_10821_2:1:2_0:0:0_c
+CTTTTGGTAGTCATAGGTGAACTCCATATAATGGTATTTTAATAAGAAATGCTATTATGCATGCCAACCA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10389_10966_1:0:0_1:0:0_61
+CATAGGGAGAGAAGGAAGAAGGGGTATGCTATATATTTTGTTAGTGGGTCTAGAATAATGGAGATGCGAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10461_11010_1:1:0_0:0:0_21
+AATCTGTTTGGCGTAAGCAGATTGAGCTAGTTATAATTATTCCTCATAGGGAGAGAAGGATGAAGGGGTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_11041_11475_1:0:0_1:1:0_7b
+GCCACATAGCACTTGTTCTTGCATCAATCATAATCCAAACTCCATGAAGCTTCATAGGAGCAACAATACT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_10767_11161_1:0:0_2:0:1_39
+GAGTTTGCTAGGCAGAATAGGAGTGATGATGTGAGGCCATTTTCGATTATTAGTATTTTGCTCCTATGAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_11211_11625_0:1:0_2:0:0_37
+CAAATGGTCTTACCACTTATAGCCACATGATGACTGATAGCAAGTCTAGCTAATCTAGCTCTACCCCCTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_11475_12014_1:1:0_2:1:0_56
+ATAGCCCTTCACATAATTCCACTTATTATTCTAACTACCAGTCCAAAACTAATTACAGGCCTGAGAATAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_11195_11669_2:0:0_1:0:0_49
+AGCAAGCCATGTTTTTAAACATGGAAGCATGAATTAGCAGTTCTTGCAATCTTTCTTGGTGAATAAGGAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_11464_11999_0:1:0_3:1:0_3a
+AGAGAAAAAGTTCGTTTTTAAGCATATTTTAAGTTCTATTGAATTTATGGTGACTCAGTGCCAGGTTGTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12174_12610_1:1:0_0:0:1_93
+GAAGGTGTGGGAATTATATCTTTCCTACTAATTGGATGATGGTACGGACGAACAGTCGCAAATACTGCAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_11715_12248_2:1:0_1:1:1_a0
+TAGGGCTGCAGTATATGCGACTGTTCTCCGTACCATCATCCAATTAGTAGGAAAGATATAATTCCCACCC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12218_12618_2:1:1_1:1:0_32
+CGGAGAACCGTCGCAAATACTGCAGCCCTACAAGCAATCCTCTATAACCGCATCTGAGACATCGGATTCA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12243_12713_2:0:0_1:0:0_bd
+GCCCTCCAAGCAATCCTCTATACCCGCATCGGAGACATCGGATTCATTTTAGCTATAGTTTGATTTTCCC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12113_12598_3:3:0_2:0:1_70
+CCTGTTTACCATGCTTATCCTCACCTCAGCCAACCACATATTTCAACCTTTCATTGGCTGAGCAGGGTTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12064_12604_0:1:0_1:0:1_aa
+GTAAATAATGTGGTTAGGGCTCCGAGGCAAAGTATAGTTGTTAAAATAAAGTTAATATTAGCGTGAGGGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12577_13079_0:0:0_1:1:1_11
+ATTTTGGTTAATGGAGATGTAGGGGGGGAAAAGGCGGTTTTGTTATTGTTACGAAGTAAATGATTCGTAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12622_13091_0:0:0_3:0:1_78
+CCCAAAACGACATCAAAAAAATCATTGCCTTCTCTACATCAAGCCAACTAGGCCTGATAATAGTGACGCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12705_13147_4:0:0_2:0:0_94
+CGACACCTAGCATTCCTACACATCTGTACCCACGCAATGTTCAAAGCTATACTCTTTCTATGCTCTGGCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12275_12781_1:0:0_1:0:1_6
+ATGATTGAGCGAGAGCATATAGAAGAGTATAGCTTTGAAGAATGCGTGGGTACAGATGTGTAGGAATGCT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12355_12806_0:1:0_1:0:0_6a
+GTCTTGTTCGTCTGCCAGGCTATGAATTATTGAGCCAGAGCATATAAAGAGTATAGCTTTGAAGAATGCG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12440_12937_5:0:0_1:0:0_8b
+ATTGCTTCAATAATTAGGTCTTTTGAGTAGAACCCTGTTAGGAATGGTATTCGTGTGAGGGCGAGGCTTC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12640_13011_2:0:0_2:1:0_62
+TGCTGTACATAGCTGTCATCGAAGTGGGGATTAGTGTAATTAGTAGGGCTCAGGCGTTGGTGTTGCAGGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12982_13475_3:1:0_2:0:1_75
+TCGCCACTTCTATGACAGCTATGAACAGCATACGACTCATTTACTTCGTAACAATCACAAAACCGCGTTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12720_13279_1:0:1_2:0:0_2
+ATTGCTAGTTTTATGGTTAGGTTGTTTAGTTCTAGTGCGATTAGTAATCCTAATACTGAAATAATTAGGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_12881_13337_0:0:0_1:1:0_89
+AATAGATGGTAAAAACCCCAGTAAACTTGAGAAGGATGAATATGGATTTGCTTTATTTATTGATAGTTTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13281_13783_1:1:0_1:0:0_67
+AATAAAGCAAATCCATATTCATCCTTCACAAGTTTACTGGGGTTTTTCCCATCTATTATTCACCGCATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13494_14044_3:1:0_1:1:0_7d
+AAATTGTACATTATATCATTCCTAATTAACATCATCTTAATTATTATCTTTTACTCCAATAATCTCGAGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13142_13600_1:0:0_1:2:0_34
+ATCTTTGTTTGCGGGTATTTTTGTTATTATAGAGATTACTCGAGATTAATTGAGTATAAGAAAATAATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13326_13750_2:0:1_2:1:0_82
+TTATTATGATGAAGTTGGAGTAATTACTCTTGATGGTATGGGAGATTGGTTGATGTATTAGGTTGATGAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13198_13763_2:0:0_0:1:0_7c
+TTTGTGTGCTTAATTATTATGATGAAGTTGGAGTAATTAATCTTGATGGTATGGGAGATTGGTTGATGTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13715_14154_1:0:0_1:1:0_96
+CCATCACGATTAATTACTCCAACTTCATCATAATAATTAAGCACACAAATTAAAAAAACCTCTATAATCA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13338_13860_2:1:1_2:0:1_4d
+ATTCACCGCATTACACCCATAAAATTCTGAACCTAAGCCTAAAAACATCCCTGACTCTCCTAGAGTTGAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13813_14351_0:1:0_0:1:0_1f
+TCAGTTAGATCCCCAAGTCTCTGGATATTCCTCAGTAGCTATAGCAGTTGTATATCCAAACACAACCAAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13482_13976_0:0:0_1:2:0_c1
+TAATTGTTACTGGGTTTGTTGGTCGTTTAATGGTTTTAGGGTTTGGTTGATCGTTTTTAGGTTTAATAGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13910_14543_2:1:0_1:1:0_30
+ATTAAACCTAAAAACGATCCACCAAACCCTAAAACCATTAAACGAGCAACAAACCGACTAACAATTAAAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13936_14395_2:2:0_1:1:1_76
+CCCTAAAACCATTAAACGACCAACAAACCCAGTAACCATTAAACCTAAACCTCCATAAATAGGTGAATGC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13940_14475_1:1:0_3:2:0_27
+AAAACCATTAAACGACCAACAAACCCACTAACAATTAACCCTAAACCTCCATAAATAGGTGAAGGCTTTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14052_14489_0:0:0_3:4:0_4c
+CAAAAATATAATTATTCATTATTTCTACACAGCATTCAACTGCGACCAATGACATGAAAAATCATCGTTG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14105_14613_0:0:0_2:0:0_48
+ATGAAAAATCATCGTTGTAATTCAACTACAGAAACACCTAATGACAAACATACGAAAAACACACCCATTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14128_14614_0:1:0_1:1:0_97
+AACTACAGAAACACCGAATGACAAACATACGAAAAACACACCCATTATTTAAAATTATTAACCACTCATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14131_14628_2:1:0_2:1:0_36
+TACAGAAACACCGAATGACAAACATACGACAAACACACCCATTATTTAAAATTATAAACCACTCATTCAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13791_14330_0:0:0_3:0:0_29
+GGCTGTTATTGTAACTGATGTGTAGTGAATGGCTAAGAAAAGACCTGTAATGATTTGGACTATAAGGCAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13944_14351_1:1:0_0:0:0_44
+AATGTGTGTTACTGATGAAAAGGCTGTTATTGTATCTGATGTGTAGTGTATGGCTAAGAAAAGACCTGTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13992_14451_1:1:0_1:3:0_52
+ATAAGCCTCGTCGGAGCTGAAGGAACAAGCAAATAAAAAATATTGAGGCTCCGTTTGCGTGTATATATCG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14442_15026_1:2:0_3:0:0_60
+CGAGGCTTATATTATGGATCAGATACATTTATAGAAACCTGAAACATTGGAGTACTTCTTCAGTTCGCAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14576_14894_2:0:0_0:0:0_5f
+AGTTATTCCAAACCTCCTATGAGCCATCCCATATATTGGAACAACCCTAGTCGAATGAATTTGAGGGGGC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14707_15163_1:1:0_1:2:0_9
+TTATCGGGGCCCTAGCAATCGTTCACCTCATCTTCCTCCACGAAACAGGATCAAACAACCCAACAGGATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14728_15189_1:2:0_2:0:0_7a
+TTCACCTCATCTTCCTCCACGAAACAGGATCAAACCACCCAACAGGATTATACTCAGATGCAGATAAAAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14794_15314_1:0:0_1:0:0_c0
+AAATTCCATTTCACCCCTACTATACAATCAAAGATATCCTAGGTATCCTAATCATATTCTTAATTCTGAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14975_15480_1:0:1_0:1:0_4e
+ATACGCCATTCTACGCTCCACTCCCCAATAAACTAGGAGGTGTCCTAGCCTTAATCTTATCTATCCTAAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15196_15749_1:1:1_2:1:0_c4
+GCTAACTAGCCCCATCTCATACTTCTCAATCATCTTAATTCTTATACCAATGTCAGGAATTATCGAAGAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14768_15298_0:1:0_1:1:0_ac
+CTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATAAGTCCTGAGCTTGGTATAAGAATTAAGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14885_15311_3:1:0_1:0:0_3
+AGTAATGTTTATACTATCAAGACATGGATATAATTTTAGTATTTTGTCTTCGATAATTCCAGAGATTGGT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14820_15346_1:0:0_0:0:0_5a
+AAGAGAAGATCTTCATTTCAGGTTTACAAGACCAGAGTAATGTTTATACTATCAAGACATGGATATAATT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14858_15398_0:0:0_3:0:0_b3
+CAGCTTTGGGTGCTGGAGGTGGGTAGTAGCTCCTTCTTCTTGATGTCTTGAGAAGAGCAGATCTTCATTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15417_15889_0:0:0_2:0:0_50
+TTCTTGAGTACATAAATTTACATAGTACAACAGTACATTTATGTATATCGTACATTAAACTATTTTCCCC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14988_15504_0:0:0_1:1:0_38
+GTATTAGCTTATATGCTTGGGGAAAATAGTTTAATGTACGATATACCTAAATGTACTGTTGTACTATGTA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15462_15945_2:1:0_0:0:0_0
+TATCGTACATTAAACAATTTTCCCCAAGCATATAAGGTAATACATTAAATCAATGGTTCAGGTCATAAAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15171_15615_1:0:0_0:1:0_c3
+TAACACAGATATGTCCTTATAACATTAGTTTAATGTGTTTAAGATAATATTCATGGTATATATATTGGTT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15361_15805_1:0:0_2:0:0_81
+TGAAGTAAGAACCAGATGTCTTATAAAGTTTCAGTTTAGCTACCCGCAAGTTTAATGGGCCCGGAGCGAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15481_15968_1:2:0_2:0:0_6d
+GTCCTTACATGCCTTGACGGCTATGTTGATGAAAGTAGGCCAAAATAAAAAGATCCCAAATGCATGACAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15523_16020_2:1:0_1:1:0_31
+GGGTTTTGCGGACTAATGATTCTTCACCTAAGGTGCGTCTAGACTGTGTGCTGTCCTTTCATGCCTTGAC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15549_16044_0:1:0_1:1:0_59
+ATGAATAATTAGCCTTAGGTGATTGGGTTTTGCGGACTAATTATTCTTCACCGAAGGTGCGTCTAGACTG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15720_16131_0:1:0_2:1:0_58
+TGTTTATGGGGTTTGGCATTAAGAGGACGGGGTGGGGGGTTTTGAGAGTTAAAATTTGGTATTGAGTAGC
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15642_16224_2:1:0_0:0:0_a5
+AGTACTAAAATATAAGTCATATTTTGGGAACTACTAGAATTGATCAGGACATAGGGTTTGATAGTTAATA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_15820_16268_3:1:0_1:0:2_7f
+TTAGAGTTTTGGTTCACGGAACATGATTTTGTAAAATTTTTACAAGTACTAAAATAAGTCATATTTTGGG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_13991_14484_3:1:0_3:4:0_20
+TAAATAGGTGAAGGCTTTAATGCTAACCCCAGACAACCAACCCAAAATAATGATCTTAAAACCAAAATAT
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_8781_9305_4:1:0_3:0:1_3e
+TAAGTGATGTTTTGATGTGCAGTGAAATTTTAGTTTTCTAGTAGGCAAACAATAAGGAATGTTGATCCAA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_14312_14826_2:1:1_4:1:0_a4
+CTTTGATTTTATAGTAGGGGTGAAATGGACATTTATCTGCATCTGAGAATAATCCTGTTGGGTTGTTTGA
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
+@chrM_408_812_0:2:1_4:2:0_ad
+TGAAAAATCATTGTTAGGACCTAAACCGTCAATAACGAAAGTAATTCTACTCATTTATAATACACGACAG
++
+IIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIIII
Binary file test-data/samtools_fastx-out1-2.fastq.bgz has changed
Binary file test-data/samtools_fastx-out1-2.fastq.gz has changed