view test-data/2_isize_overflow.sam.expected @ 0:bc0cc7bfbfe9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_fixmate commit 0fe00966500158720fb63dc9b28f6a4ca0d1e1eb
author iuc
date Fri, 28 Sep 2018 04:28:45 -0400
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@HD	VN:1.4	SO:queryname
@SQ	SN:ref1	LN:45
@SQ	SN:ref2	LN:40
of1	99	ref1	10	30	23M	=	8	21	AAGTCGGCAGCGTCAGATGTGTA	???????????????????????	MQ:i:30	MC:Z:23M
of1	147	ref1	8	30	23M	=	10	-21	CTGTCTCTTATACACATCTCCTT	???????????????????????	MQ:i:30	MC:Z:23M
r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	MQ:i:30	MC:Z:8M4I4M1D3M
r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	MQ:i:30	MC:Z:9M
r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
r003	33	ref1	9	30	5H6M	=	29	25	AGCTAA	*	MQ:i:30	MC:Z:6H5M
r003	17	ref1	29	30	6H5M	=	9	-25	TAGGC	*	MQ:i:30	MC:Z:5H6M
r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*
r007	9	ref1	9	30	5H6M	=	9	0	AGCTAA	*	MC:Z:*
r007	5	ref1	9	30	*	=	9	0	GGGGGG	*	MQ:i:30	MC:Z:5H6M
u1	4	*	0	30	*	*	0	0	TAATTGGGTCTTCAGAGCACCTA	???????????????????????
x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*
x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????
x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????
x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????
x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????
x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????