Mercurial > repos > iuc > samtools_markdup

annotate test-data/3_two_read_mapped.sam @ 7:ce32171c6d44 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit deb37086489259607f5edcba25750434bbf4823e
author iuc
date Fri, 07 Apr 2023 21:47:07 +0000
parents d0a568e1904b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
1 @HD VN:1.4 SO:queryname
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
2 @SQ SN:ref1 LN:45
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
3 @SQ SN:ref2 LN:40
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
4 of1 99 ref1 10 30 23M = 8 2 AAGTCGGCAGCGTCAGATGTGTA ???????????????????????
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
5 of1 147 ref1 8 30 23M = 10 -2 CTGTCTCTTATACACATCTCCTT ???????????????????????
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
6 r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
7 r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
8 r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
9 r003 0 ref1 9 30 5H6M * 0 0 AGCTAA *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
10 r003 16 ref1 29 30 6H5M * 0 0 TAGGC *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
11 r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
12 r007 8 ref1 9 30 5H6M * 0 0 AGCTAA *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
13 r007 4 ref1 9 30 * * 0 0 GGGGGG *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
14 r008 12 ref1 9 30 5H6M * 0 0 AGCTAA *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
15 r008 4 ref1 9 30 * * 0 0 GGGGGG *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
16 uu1 4 * 0 30 * * 0 0 TAATTGGGTCTTCAGAGCACCTA ???????????????????????
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
17 x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA *
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
18 x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ?????????????????????
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
19 x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ??????????????????????????
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
20 x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ?????????????????????????
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
21 x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ????????????????????????
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
22 x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ???????????????????????