Mercurial > repos > iuc > samtools_markdup

annotate test-data/3_mark_supp_dup.sam @ 9:40fa6c240105 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:14 +0000
parents d0a568e1904b
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
3
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
1 @HD VN:1.4 SO:coordinate
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
2 @SQ SN:contig_000000000 LN:11391
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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3 @SQ SN:contig_000000008 LN:29043
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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4 entry1 163 contig_000000000 109 60 250M = 137 278 GATTGATATTTATTTATTATTTTATTATGTTTATTTCTTTATTTATTATCATTATTATTATTATTCTTATTATTGTTATATAAAAACATCGTAAACACAGTAAACGATAGTACTAATACTACTACTAATAAAGATAGATTTTTTTATATATATATATGTATGATCTTTTAACGTTACTTATTCAAATGCTATGTCATTTTGTAATATTTGTCATGGCAAGTATCAAACTGCTTCGGTTCTCATTGATTAG 1111>DD3DFFF3B333B3FBG3D3A33BG3D3F3333AFG3DF3D33B22D22222222D2B2A2ADE2AA2DAG222BD22D11//11//00B110ABB2FD1?>/>A2@2@2@F2@F21GB11FDDF21111111B2B11>/?1FB22>>>22>B2BG22B12B>F>11/0<0/2B2222B2@G11>22@22@G222201?1??1<?DF1FG1001<1>1F1=11>111>1-....000=0000=00 NM:i:18 AS:i:164 XS:i:0 MQ:i:60 MC:Z:250M ms:i:6744
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
5 entry2 163 contig_000000000 109 60 250M = 137 278 TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00 NM:i:2 AS:i:240 XS:i:0 MQ:i:60 MC:Z:250M ms:i:9279
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
6 entry3 99 contig_000000000 116 60 250M = 222 356 ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF NM:i:0 AS:i:250 XS:i:0 MQ:i:60 MC:Z:250M ms:i:9509
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
7 entry4 163 contig_000000000 116 60 250M = 222 356 ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG BCCCCFFFFFFFGGGGGGGGGGEHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHGHHGHHHHHEEF5FEGFGFHHGHHFHHHHFHFDEGHAEGHHHFHHFHFFHHGBGGHHFHHFHFHHHGGHGHFGEFHDGGHGHHHHGDHHFFHHGHHHDFDHGHHHHHGHGBHGHHFBDHGGF2FDHHHBGD2@DHHFEHHFFHEC2<FD1GF<DDGHHB0GHAAFFCGGDHHG1FGF0DDGGFH0 NM:i:0 AS:i:250 XS:i:0 MQ:i:60 MC:Z:250M ms:i:9604
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
8 entry1 83 contig_000000000 137 60 250M = 109 -278 TTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAGAACCTAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATTTATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCACACTGCCTGGGTTATCATTGATTCGGTACTAGAGATAGTGTTTAAATAATACG ;0C0G;0C0:0FFGDD00D==00000D=00D1D=1DDDF>11=<<1><111<?1<111?1D1??00<>@@11F//0A>2HG>B>2B22222B2FFB2BB22>>2B22BFBEEFGHHG2FGBB22FFB2DB1100F/1FG@G1BHHFGGAGB1DB@22EB00GCEADB1AFHHHGD21BEDF1AF1FA11DAA221BD1AA/EF00FF1FF2EDEBGEA0B03AD3D33AB1A1GEFGEFB3DB31>>11> NM:i:7 AS:i:222 XS:i:19 MQ:i:60 MC:Z:250M ms:i:5687
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
9 entry2 83 contig_000000000 137 60 250M = 109 -278 GTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAG 0GHHHBD0DFGHHHG<D0FD0BD0FHHHG=GGBGG1DGDGHFFGFDHDHGFGAGGHHHGHHHHHHHGGFHHHEGHHGHHGHHGHHHHDBHHHHHHGFGHHHHFHHHFHFG@EBGG4BHGGHHHHHHHHGHHHHHHGHFGBHHHHHHHHHHFHFFHHHHEHFHHHHHHGAFHHHFGHHG2HFHHHGHHHHHHHGHEHHHHGEHGHGHHHHGHHHHHHHHHHHHHGFGHFGFGGGGGGGGFFFFFDFBBBBB NM:i:0 AS:i:250 XS:i:0 MQ:i:60 MC:Z:250M ms:i:8804
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
10 entry3 147 contig_000000000 222 60 250M = 116 -356 TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGCCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA 9BGC0FFBGFFGGGGFFGFEGGHGHGCGHHHHGHGGHGHHHGHHHHGHHGGGHHHHFHGHGHHHHHHGHHFHHHHHHHHHGHHHHGHHGHHHHG2HHGFHHGHHHHHHDFHHHGGHHGHGHHHFHHDHHHHHHHHHHHHFHHHHHGHHHHHHHHHHHHFFHHHHGHHHHHHFHHHHHHHHHHHHHHGCGGGHHHGGGGGGGGGGGGGGGHHHHHGHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFBBBBB NM:i:1 AS:i:245 XS:i:0 MQ:i:60 MC:Z:250M ms:i:9634
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
11 entry4 83 contig_000000000 222 60 250M = 116 -356 TAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTA GGGGGGGGGGGGGGGGGFFGHHHHHGGHHGHHHHGFHHHHGHHHHHHHHHGGHHFEHHHHHHHHHGGHHHHHHHHHHHFHHGFHGHHHGFFHFHHHHHHHHHFHHEHHHHHHHGGHHGHGHHHHHHHHHFGGHHHHHHGFHFHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHGHHHHHHHHHHHGGGGGHHHGGGGGGGGGGGGGGGHHHHHHHGHHHHHGHHHHHGGGGGGGGGGFFFFFFFACCBB NM:i:0 AS:i:250 XS:i:0 MQ:i:60 MC:Z:250M ms:i:9217
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
12 entry5 163 contig_000000000 304 60 250M = 422 368 ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAGAGATAGTGTTTAAATAATAAGTGTCCATCAAAGAGCAGAACAGCTGCGTGTTTGCGTGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAG AABBBFFFFFFFGGGFGGGGGGHHHHHHHHHGHHHHHHHGGHGHHHHHHHHHHGHHHHHHHHFHFGHHHHHHHHHGHGGHFHHHHHHHHHHGFFHHHHHEHHHGHHHHHGDEEGHGHGEGGHHHHHHHHHGHHHFGHHHHHHHFGHHHHHGG?GGGAGHHFFHHFFGG2>@FGGFGFBGGHFHGHHHHHFFF?FGHHGGGGFGEGGHHGGGGHGFGDGHGHHFHEGFHGFGFFHFFHHFHGHFHBFGGF? NM:i:0 AS:i:250 XS:i:0 MQ:i:60 MC:Z:250M ms:i:9562
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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13 entry6 69 contig_000000000 304 0 * = 304 0 GCGGTGGAACGCCGCTTCGGCAACGATCTTCCGTCGTCTCCAGTGGAGTGGCTGACGGATAATGGTTCATGCTACCGGGCTAATGAAACACGCCAGTTCGCCCGGATGTTGGGACTTGAACCGAAGAACACGGCGGTGCGGAGTCCGGAGAGTAACGGAATAGCAGAGAGCTTCGTGAAAACGATAAAGCGTGACTACATCAGTATCATGCCCAAACCAGACGGGTTAACGGCAGCAAAGAACCTTGCAG BCCCBCBCFFDDGGGGGGGGGGGHGGHHHHHHGHHGGGHHHHHHHHHHHHGGHGGHGGGGGHHHHHHHHHHHHHHHGGGGGHHHHHHHHHHGGGGGHHHGGGGGGDGGHHHHGHHGHHHGHHGGGGGGGHHGGGGGGGGGGAGGGGGGDGAGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBEFFFFFFFFFEFFFFFFEFFFFFF AS:i:0 XS:i:0 MQ:i:49 MC:Z:35M215S ms:i:9339
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
14 entry6 137 contig_000000000 304 49 35M215S = 304 0 ATTTTGTAACATTTGTCATGCCAAGTATCAAACTGGATTTGCCCCTATATTTCCAGACATCTGTTATCACTTAACCCATTACAAGCCCGCTGCCGCAGATATTCCCGTGGCGAGCGATAACCCAGCGCACTATGCGGATGCCATTCGTTATAATGCTCGAACGCCTCTGCAAGGTTCTTTGCTGCCGTTAACCCGTCTGGTTTGGGCATGATACTGATGTAGTCACGCTTTATCGTTTTCACGAAGCTCT ABBBBFFFFFFFGGGGGGGGGGHHHHHHHHGHGHHHHHHHGHHHGHGHHHHHHFGHHGHHHIHHHHHIHHHHHHHHHGHHHHHHHHGHGGGGGHGGGGGHHHHHHHGG1EGGGGGGFHGGHHHGHGGGGGGHHHHGGCGFHHGHHHHFHEHHHHHHHGGGHHGGGHGEGHGFHGCGCFHHHHHHHGGGGD?FFGA9EFFGCGG?AGGFGGGGGGFFFFFFFFFFFFFFFFFBFFEF?FEBBFED.ACFF0 NM:i:0 AS:i:35 XS:i:0 MC:Z:* ms:i:9398
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
15 entry5 83 contig_000000000 422 60 250M = 304 -368 TGTGTGTGTGTGTGAGTTTGAAAGCAATAGACAGAGGGTAAGACTGTGTAATAGAGTGTAAGAGAGTGTCAGAGTGAGTGTGTAAATGGACGCCTATCATTTAGCATGGGTCAATCTAGTGAAAGCTCGCAGCAGCTCTCTAAGTGTCTGGCATTGCAGCAAATTGAGCCGAATGCATTTCTGCACACGTAAACACGGCAGAATACAGATTAGCCAAGCCCAATCTCTCATTAAATCCACATTTAATAGA .DDFGEAGGGFGFHGHHFFHHHHHHHHHHGCHHHHHHFFHHHHHHHHHHHHHHHHHHGHHFHHHHHHGHHHHHHHHHGHHHHHHHHGGGGGHGHHHFHHHHFHHHHHHHHHGHHHHHHHHHHHEEEEGHHHHHHHGHHHHHHHHHGHGHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHGHFHHHGGGHHHHHHHHHHHHHHGHHGGHHHHHHFHEFCHHGGGGGGGGGGFFFFFFFCCCCC NM:i:0 AS:i:250 XS:i:0 MQ:i:60 MC:Z:250M ms:i:9461
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
16 entry7 121 contig_000000000 3891 60 250M = 3891 0 ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC 99;GFC/0FC;/AFGFC0BDA.?BGFFC0FB9G0C/HHGBFHG:.GFCGEHGHGHFHHHEFHHGBGDF1EHF1GFGGFDFHFHHHFHHG1BG1HHGHHEHGBC>2<2HHHHFHHFHHHHFEGD2EFHHGEF4EHHFFG?/GGF3GFFCE3HGHFHGAHFGF1AGHHGGHHGD5HGF3HF3HHFHHHGHG1FEHHHFHHHEHHGFHHHFHHHHFGGCECEEGHHHGHHHGGGGFGGFFGFFF4BBBBBABB NM:i:0 AS:i:250 XS:i:0 MC:Z:* ms:i:4569
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
17 entry7 181 contig_000000000 3891 0 * = 3891 0 CAGTCACTCGCCTCCCGCTAACAGTCCAACTCTTCTGGTTCATCTGCGAGTCATGGTGTACCGATGTTTTGTTCTCTAGAAAGCGAAAACATTGATATGGCTGAGGGGGGCTAGCAATTTTGGCCTGATAATGGGTGTGAAATATTCAAACTGTTATGATGCTAGCCCAAATAAAACTGTTGGGACTATCTCGGGAAGAAAAATCATGATCAGAGAAGCTAGGAAAGTGTCCTTGGTATGGTAAGCACTG ////-------;----0090;.9/0/000A//::.;.0000::.?@<=0/0=0./00..<..11>00>>0111<?111<////<20GF@212222<1F011B?//<E0FGFB211B1?0/??01BB22210?>?1@222B22@211122B11E@22112110000/B222A222ADB//0FB2DDBA///A/01D11011ADD211D1211BA11A311331D1A10B1FAFB1A1B3111@33111>11 AS:i:0 XS:i:0 MQ:i:60 MC:Z:250M ms:i:8580
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
18 entry8 121 contig_000000000 3891 60 250M = 3891 0 ACACCACCAGCACCAGCCTAAACCGTTGATACAAGGCAGGATGGATCCGTGCTTTCATGTTGTTGATGCTAAATTCTGACTCACATCTGAATATTCCAGCAGAAATCGAGACTCATCAGAGCAGGCAACGTTTTTACAATCTTTTATTGTCCAATTTTGGTGAGCCTGTGTGAATTGTAGTCTCAGTTTCCTGTTCTTAGCTGACAGGAGTGGCACCCGGTGTGGTCTTCTGCTGCTGTAGCCCATCCGC 99;.9//FFF9/GFB9FBGBC.A.FCFGFGFBHHGB:0GHFCG-AA@CHGC0FFGGC.HC>><BGFFHHGGHEHFHHFGFFGHHGF1?11<1HHG<CFGBFGEHFGFGDHHG2FGEHFHCGGDGGHGFGGFDFHHFHHGGFHGEEHFBGEHHHGGEFHHHHGAGHFE1BFHHHGHGGGFHFHFDDFFCAEFFGEFHHHHHHFHGGBFHFHFFEEA?CEEAHHHHHCGF0CFFGFFF1FFF1AA@DAAA@A NM:i:0 AS:i:250 XS:i:0 MC:Z:* ms:i:3281
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
19 entry8 181 contig_000000000 3891 0 * = 3891 0 GACGGCGCCTGGAGCGCGTAGGCAAAGCATGATCATCTGAGCACGGCGAACGAGAGTCAGACAAAGGGTTGATCGCCAGTAACGCTCGAGAAAGACACTCCCCCGCAACAACAATCAAACCAACAGTGCACTTTCATTTGCGAATCATGGAATAATGTTGGTTTGGGCTGTAGAAGGCCAAGATATATAAATTGCTGTAGAGGGTTGGGCATGTGGACCGTAAAATGGGTGGGAAGTATAAGAACTTTGT 9;-----/;;--------/;9//////////////////-9------;...C09000;00090/...90.;---./00....-..<.000=0<00..---////1</00211221/B?//122011211111B111//>//2221122222@11>///CE?>/>//1112211111012B22222AD22110011111B/0A///B01111111ABB0013ED10FE1B111333A3333@33D>>1111 AS:i:0 XS:i:0 MQ:i:60 MC:Z:250M ms:i:8542
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
20 entry9 163 contig_000000008 28855 12 54S189M7S = 28855 189 CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATGTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGTGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGT BCCBBFFCBCCFGGGGGGGGGGGHHHHHHHHGGGGGHHHHHHHHHHHHF5DGG5BGFDG5GFHFEHF5F553GHA1GEGHFEAFAF5FEGHFHFF1EGGHHHHHGCEFEEGFHFHFHFHHHH4444?44FE4B4?4D44D444433B20/??FH2?/?/32222D2FB//F>2FDHF00???/??CHGGGHFHBGHB<>1<<1DF1D0=<0FDGB0=000</<.G:CHB:.;;000;00CH0;0;0;00; NM:i:3 AS:i:174 XS:i:159 SA:Z:contig_000000008,28949,+,95M155S,12,1; MQ:i:30 MC:Z:34S189M27S ms:i:8529
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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21 entry10 99 contig_000000008 28855 15 54S189M7S = 28855 189 CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGT DDECDFFDCCCFGGGGGGGGGGHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHGGGHHHHHHHHHHHEHGHHHHHGHGFFGGHHFHHHHHHHHHHGFEFDFHHHHHHHHHHHHGHFGFHHFEHDGGHCCFEHFHHFHHHHH/FFFHGHHHCCGGGGFHGHGHHHHHHEDDFDHFFHHHHFGHFGFDHDGEDFHHCEECFGHEEFAHFCGH1CF1E1FBFFGF NM:i:1 AS:i:184 XS:i:164 SA:Z:contig_000000008,28949,+,95M155S,15,1; MQ:i:32 MC:Z:34S189M27S ms:i:8035
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
22 entry9 83 contig_000000008 28855 30 34S189M27S = 28855 -189 TACTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGTTGGGTTGTTTATAACCTTTA :0FGEEGGGGGGEEHHHHC:00C:CGGGC0GBFGD0<DHFEHHHD=00<<.1<0GFE.FCG1FDF11BHGFCAHFFBFCEGCF</HFDGDHDFFB22GDHFHHG4?3?B?4?4F4FFH?D4BF3/333HHGGEEGBHBHHFFHEHHEGF2HHFEGHGGGHHFHHHFDGBAHHFHHHHHFHFHHFGHHEHHHHGHG5HHGGGGGHGHGHHHHHHHHHHHHHHHGFHHHGGGGGGGGGGGFFFFFFFDDDDD NM:i:1 AS:i:184 XS:i:145 MQ:i:12 MC:Z:54S189M7S ms:i:7507
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
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diff changeset
23 entry10 147 contig_000000008 28855 32 34S189M27S = 28855 -189 TGTTTTGTTGGGTTGTTTTTTACATTTATTTAGTTATTTATATTATATCTCAACCAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTTCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGTACTTTGTTGGGTTGTTTATAACCTTTA <:.:.<.EEA..A:<-000<00000<:000DGFDH0H=0HD00H===.10.11<BCDHGGDGHF11GBFHEFEFGCFF//C/FA?AHEGFDG?B?BD3GG4FHHGDDG4BHDFHEDEF?F4?GB/3B3HGGHGHHHHHHHFHHHHHHFB3HFEGGHGCGHGHHGFGG5BHHHGHFFHHBFGHFHHF5FHHHHHHGDHG2G5FHHGHGHHHHHHHHHHHHHHHGGHHHGGGGGGGGGGGFFFFFFFCDDDC NM:i:2 AS:i:179 XS:i:137 MQ:i:15 MC:Z:54S189M7S ms:i:9375
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
24 entry9 2211 contig_000000008 28949 12 95M155H = 28855 95 CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGT BCCBBFFCBCCFGGGGGGGGGGGHHHHHHHHGGGGGHHHHHHHHHHHHF5DGG5BGFDG5GFHFEHF5F553GHA1GEGHFEAFAF5FEGHFHFF NM:i:1 AS:i:90 XS:i:0 SA:Z:contig_000000008,28855,+,54S189M7S,12,3;
d0a568e1904b "planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 0f75269223c0821c6c82acf98fde947d0f816f2b"
iuc
parents:
diff changeset
25 entry10 2147 contig_000000008 28949 15 95M155H = 28855 95 CAGTTGGGTTAAATATTTGGTGCTTTGTTGGGTTGTTTATAACCTTTATTTAGTTATTTATATTATAACTCAACCAGTTGGGTTAAATATTTGGT DDECDFFDCCCFGGGGGGGGGGHHHHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHGGGHHHHHHHHHHH NM:i:1 AS:i:90 XS:i:0 SA:Z:contig_000000008,28855,+,54S189M7S,15,1;