Mercurial > repos > iuc > samtools_markdup

comparison macros.xml @ 10:229ba92a3b55 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit c508c3af0f4121dcc38e0be63db00a604e997b8a
author iuc
date Thu, 19 Jun 2025 13:00:18 +0000
parents 40fa6c240105
children
comparison
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9:40fa6c240105 10:229ba92a3b55
9 tool's version is controlled by the TOOL_VERSION token 9 tool's version is controlled by the TOOL_VERSION token
10 (because their version is ahead of the requirement version .. 10 (because their version is ahead of the requirement version ..
11 please only bump the minor version in order to let the requirement 11 please only bump the minor version in order to let the requirement
12 version catch up eventually). To find the tools check: 12 version catch up eventually). To find the tools check:
13 `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` --> 13 `grep "<tool" . -r | grep -v VERSION_SUFFIX | cut -d":" -f 1` -->
14 <token name="@TOOL_VERSION@">1.20</token> 14 <token name="@TOOL_VERSION@">1.21</token>
15 <token name="@VERSION_SUFFIX@">2</token> 15 <token name="@VERSION_SUFFIX@">0</token>
16 <token name="@PROFILE@">22.05</token> 16 <token name="@PROFILE@">22.05</token>
17 <token name="@FLAGS@"><![CDATA[ 17 <token name="@FLAGS@"><![CDATA[
18 #set $flags = 0 18 #set $flags = 0
19 #if $filter 19 #if $filter
20 #set $flags = sum(map(int, str($filter).split(','))) 20 #set $flags = sum(map(int, str($filter).split(',')))
218 </xml> 218 </xml>
219 219
220 <xml name="citations"> 220 <xml name="citations">
221 <citations> 221 <citations>
222 <citation type="doi">10.1093/gigascience/giab008</citation> 222 <citation type="doi">10.1093/gigascience/giab008</citation>
223 <citation type="doi">10.1093/bioinformatics/btr076</citation>
223 </citations> 224 </citations>
224 </xml> 225 </xml>
225 <xml name="version_command"> 226 <xml name="version_command">
226 <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command> 227 <version_command><![CDATA[samtools 2>&1 | grep Version]]></version_command>
227 </xml> 228 </xml>