Mercurial > repos > iuc > samtools_markdup

comparison samtools_markdup.xml @ 4:8c440c3002bc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 1354b1358df89a922c3243f7e27ce789094b8644"
author iuc
date Sun, 19 Dec 2021 15:56:46 +0000
parents d0a568e1904b
children 887e02a45734
comparison
equal deleted inserted replaced
3:d0a568e1904b 4:8c440c3002bc
135 <output name="output" file="6_markdup.expected.bam" ftype="bam" lines_diff="4" /> 135 <output name="output" file="6_markdup.expected.bam" ftype="bam" lines_diff="4" />
136 </test> 136 </test>
137 <!-- 7) check new mode s --> 137 <!-- 7) check new mode s -->
138 <test expect_num_outputs="1"> 138 <test expect_num_outputs="1">
139 <param name="bamfile" value="1_markdup.sam" /> 139 <param name="bamfile" value="1_markdup.sam" />
140 <param name="mode_selector" value="s" /> 140 <param name="mode" value="s" />
141 <output name="output" file="7_markdup.expected.bam" ftype="bam" lines_diff="4" /> 141 <output name="output" file="7_markdup.expected.bam" ftype="bam" lines_diff="4" />
142 </test> 142 </test>
143 <!-- 8) check include-fails --> 143 <!-- 8) check include-fails -->
144 <test expect_num_outputs="1"> 144 <test expect_num_outputs="1">
145 <param name="bamfile" value="1_markdup.sam" /> 145 <param name="bamfile" value="1_markdup.sam" />
146 <param name="fails" value="- -include-fails" /> 146 <param name="include_fails" value="true" />
147 <output name="output" file="8_markdup.expected.bam" ftype="bam" lines_diff="4" /> 147 <output name="output" file="8_markdup.expected.bam" ftype="bam" lines_diff="4" />
148 </test> 148 </test>
149 <!-- 9) test sam format --> 149 <!-- 9) test sam format -->
150 <test expect_num_outputs="1"> 150 <test expect_num_outputs="1">
151 <param name="bamfile" value="1_markdup.sam" /> 151 <param name="bamfile" value="1_markdup.sam" />