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diff test-data/9_markdup.expected.sam @ 9:40fa6c240105 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:14 +0000
parents d0a568e1904b
children
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--- a/test-data/9_markdup.expected.sam	Mon Nov 20 22:15:54 2023 +0000
+++ b/test-data/9_markdup.expected.sam	Sun Sep 08 03:26:14 2024 +0000
@@ -1,7 +1,7 @@
 @HD	VN:1.4	SO:coordinate
 @SQ	SN:contig_000000000	LN:11391
-@PG	ID:samtools	PN:samtools	VN:1.12	CL:samtools sort -@ 0 -m 768M -T . -O sam -o coordsort.sam /tmp/tmpuzvw6tdp/files/b/a/d/dataset_badf390c-6dae-4603-937a-f000db10e1eb.dat
-@PG	ID:samtools.1	PN:samtools	PP:samtools	VN:1.12	CL:samtools markdup -@ 0 -m t -O SAM coordsort.sam /tmp/tmpuzvw6tdp/files/c/4/1/dataset_c4121439-d0e4-4e9a-b597-951d44bf57bc.dat
+@PG	ID:samtools	PN:samtools	VN:1.20	CL:samtools sort -@ 0 -m 768M -T /tmp/tmpo1hsz7dc/tmp -O sam -o coordsort.sam /tmp/tmpo1hsz7dc/files/1/a/f/dataset_1afa2f60-62b8-4548-bb89-e30d23322a3e.dat
+@PG	ID:samtools.1	PN:samtools	PP:samtools	VN:1.20	CL:samtools markdup -@ 0 -m t -O SAM coordsort.sam /tmp/tmpo1hsz7dc/job_working_directory/000/20/outputs/dataset_5a651845-a763-4ddc-ac05-3734afca2130.dat
 entry1	1187	contig_000000000	109	60	250M	=	137	278	GATTGATATTTATTTATTATTTTATTATGTTTATTTCTTTATTTATTATCATTATTATTATTATTCTTATTATTGTTATATAAAAACATCGTAAACACAGTAAACGATAGTACTAATACTACTACTAATAAAGATAGATTTTTTTATATATATATATGTATGATCTTTTAACGTTACTTATTCAAATGCTATGTCATTTTGTAATATTTGTCATGGCAAGTATCAAACTGCTTCGGTTCTCATTGATTAG	1111>DD3DFFF3B333B3FBG3D3A33BG3D3F3333AFG3DF3D33B22D22222222D2B2A2ADE2AA2DAG222BD22D11//11//00B110ABB2FD1?>/>A2@2@2@F2@F21GB11FDDF21111111B2B11>/?1FB22>>>22>B2BG22B12B>F>11/0<0/2B2222B2@G11>22@22@G222201?1??1<?DF1FG1001<1>1F1=11>111>1-....000=0000=00	NM:i:18	AS:i:164	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:6744
 entry2	163	contig_000000000	109	60	250M	=	137	278	TATTGATATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATACAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCATGTATCAAACTGCCTGGGTTATCATTGATTAG	BBBBB5F5DFFFGGGFGGGGGGHHHHHHHHHGHHGHHHHHHHHHHHHGGHHHHHHHEHHGHHGHHFHHHHHGHHHHHFHHHD5A33FBGBFHGGGFGGEGGGBGGAEGAEHH5GD5FEGFD5GGFGHFHE4GHGGHHHHHHHDEEA?FGHHGHGHFBEFFHEGHH4GGHHCFFFHHFHHHHHHBFHG1FFBFF01BGHHHFCFF@1GHHBGGFHFF1?1?FBGGF11FD110FG.<FFGGH1FGH0DG00	NM:i:2	AS:i:240	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9279
 entry3	99	contig_000000000	116	60	250M	=	222	356	ATTTATTTATTATTTTATTATGTTTATTTATTTATTTATTATCATTATTATTATTATTATTATTATTGTTATATAAAAACATAGTAAACACAGTAAACGATAGTAGTAATACTACTACTAATAAATATATATTTTTTTATATATATATATGTATGTTCTTTTAATGTTAATTTTTCAAATGCTTTGGCATTTTGTAACATTTGTCATGCCAAGTATCAAACTGCCTGGGTTATCATTGATTAGGTACTAG	BBBBBFFFFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHHHHHHHHHHHHHHGGHGGHGHHHHHGHHHHHHHHHFHHHGHHGHHHHGHHHGGHHHHHHHHHHHHHGHHHHHGHHHHIHHHIIHHHHHHHGHGHHHGHHHHGHHHGHHGHHHHGHHHHHHGHBFFHHHHHHHGHHHGHEHHHFFGGHHHHHHHEHHHFH=GHHHF	NM:i:0	AS:i:250	XS:i:0	MQ:i:60	MC:Z:250M	ms:i:9509