Mercurial > repos > iuc > samtools_markdup

view test-data/stats.txt @ 9:40fa6c240105 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:14 +0000
parents d0a568e1904b
children
line wrap: on
line source

COMMAND: samtools markdup -@ 0 -m t -s -f /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_9e69bd59-3165-4ede-92bf-2f438627a6a1.dat -O BAM coordsort.sam /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_ccf59cfe-ffbd-41d5-9412-d7a7ac6e65d9.dat
READ: 16
WRITTEN: 16
EXCLUDED: 3
EXAMINED: 13
PAIRED: 10
SINGLE: 3
DUPLICATE PAIR: 4
DUPLICATE SINGLE: 2
DUPLICATE PAIR OPTICAL: 0
DUPLICATE SINGLE OPTICAL: 0
DUPLICATE NON PRIMARY: 0
DUPLICATE NON PRIMARY OPTICAL: 0
DUPLICATE PRIMARY TOTAL: 6
DUPLICATE TOTAL: 6
ESTIMATED_LIBRARY_SIZE: 4