Mercurial > repos > iuc > samtools_markdup
view test-data/stats.txt @ 9:40fa6c240105 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author | iuc |
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date | Sun, 08 Sep 2024 03:26:14 +0000 |
parents | d0a568e1904b |
children |
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COMMAND: samtools markdup -@ 0 -m t -s -f /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_9e69bd59-3165-4ede-92bf-2f438627a6a1.dat -O BAM coordsort.sam /tmp/tmpo1hsz7dc/job_working_directory/000/8/outputs/dataset_ccf59cfe-ffbd-41d5-9412-d7a7ac6e65d9.dat READ: 16 WRITTEN: 16 EXCLUDED: 3 EXAMINED: 13 PAIRED: 10 SINGLE: 3 DUPLICATE PAIR: 4 DUPLICATE SINGLE: 2 DUPLICATE PAIR OPTICAL: 0 DUPLICATE SINGLE OPTICAL: 0 DUPLICATE NON PRIMARY: 0 DUPLICATE NON PRIMARY OPTICAL: 0 DUPLICATE PRIMARY TOTAL: 6 DUPLICATE TOTAL: 6 ESTIMATED_LIBRARY_SIZE: 4