# HG changeset patch
# User iuc
# Date 1660555077 0
# Node ID b5527cc104ab9cce6240a725000e31884982710f
# Parent  887e02a45734feb2152fbe55045e7cb43dfba8ae
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_markdup commit 5cb103832529f17e5c72e7f122758c13519fbe5e

diff -r 887e02a45734 -r b5527cc104ab macros.xml
--- a/macros.xml	Wed Jun 22 07:48:23 2022 +0000
+++ b/macros.xml	Mon Aug 15 09:17:57 2022 +0000
@@ -5,7 +5,7 @@
             <yield/>
         </requirements>
     </xml>
-    <token name="@TOOL_VERSION@">1.13</token>
+    <token name="@TOOL_VERSION@">1.15.1</token>
     <token name="@PROFILE@">20.05</token>
     <token name="@FLAGS@"><![CDATA[
         #set $flags = 0
@@ -103,7 +103,7 @@
         #end if
     ]]></token>
 
-    <xml name="optional_reference">
+    <xml name="optional_reference" token_help="" token_argument="">
         <conditional name="addref_cond">
             <param name="addref_select" type="select" label="Use a reference sequence">
                 <help>@HELP@</help>
diff -r 887e02a45734 -r b5527cc104ab samtools_markdup.xml
--- a/samtools_markdup.xml	Wed Jun 22 07:48:23 2022 +0000
+++ b/samtools_markdup.xml	Mon Aug 15 09:17:57 2022 +0000
@@ -1,4 +1,4 @@
-<tool id="samtools_markdup" name="Samtools markdup" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@" >
+<tool id="samtools_markdup" name="Samtools markdup" version="@TOOL_VERSION@+galaxy0" profile="@PROFILE@" >
     <description>marks duplicate alignments</description>
     <macros>
         <import>macros.xml</import>