Mercurial > repos > iuc > samtools_merge
comparison test-data/test_input_1_a.sam @ 0:740ce0a18f0d draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit b3426aed6615742d96dfb8f7346a9e0d4e391a99
author | iuc |
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date | Sun, 14 Oct 2018 13:44:49 -0400 |
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-1:000000000000 | 0:740ce0a18f0d |
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1 @HD VN:1.4 | |
2 @SQ SN:insert LN:599 | |
3 @SQ SN:ref1 LN:45 | |
4 @SQ SN:ref2 LN:40 | |
5 @SQ SN:ref3 LN:4 | |
6 @RG ID:fish PG:donkey | |
7 @RG ID:cow PU:13_&^&&*(:332 | |
8 @RG PU:*9u8jkjjkjd: ID:colt | |
9 @PG ID:bull PP:donkey | |
10 @PG ID:donkey | |
11 @PG ID:moose | |
12 @PG PP:moose ID:cow | |
13 @CO | |
14 r000 99 insert 50 30 10M = 80 30 ATTTAGCTAC AAAAAAAAAA RG:Z:cow PG:Z:bull | |
15 r000 211 insert 80 30 10M = 50 -30 CCCAATCATT AAAAAAAAAA RG:Z:cow PG:Z:bull | |
16 r001 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:fish PG:Z:donkey | |
17 r002 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 PG:Z:donkey | |
18 r003 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:cow | |
19 r004 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt PG:Z:donkey | |
20 r003 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:cow PG:Z:donkey | |
21 r001 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:fish PG:Z:donkey | |
22 x1 0 ref2 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:colt PG:Z:bull | |
23 x2 0 ref2 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:colt PG:Z:bull | |
24 x3 0 ref2 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:fish PG:Z:bull | |
25 x4 0 ref2 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:fish PG:Z:bull | |
26 x5 0 ref2 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:fish PG:Z:bull | |
27 x6 0 ref2 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow | |
28 u1 4 * 0 30 23M * 0 0 TAATTAAGTCTACAGAAAAAAAA ??????????????????????? |