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comparison test-data/test_input_1_b_regex.sam @ 0:740ce0a18f0d draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit b3426aed6615742d96dfb8f7346a9e0d4e391a99
author iuc
date Sun, 14 Oct 2018 13:44:49 -0400
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-1:000000000000 0:740ce0a18f0d
1 @HD VN:1.4
2 @SQ SN:insert LN:599
3 @SQ SN:ref2*HLA:1a:2:b LN:40
4 @SQ SN:ref3 LN:4
5 @SQ SN:ref1 LN:45
6 @PG ID:llama_{a}
7 @RG ID:fish-[1] PG:llama_{a}
8 @RG ID:cow-[2] PU:13_&^&&*(:332 PG:donkey
9 @RG PU:*9u8jkjjkjd: ID:colt
10 @PG ID:bull PP:donkey
11 @PG ID:donkey
12 @CO Do you know?
13 x7 0 ref2*HLA:1a:2:b 1 30 20M * 0 0 AGGTTTTATAAAACAAATAA * RG:Z:cow-[2] PG:Z:bull
14 x8 0 ref2*HLA:1a:2:b 2 30 21M * 0 0 GGTTTTATAAAACAAATAATT ????????????????????? RG:Z:cow-[2] PG:Z:bull
15 x9 0 ref2*HLA:1a:2:b 6 30 9M4I13M * 0 0 TTATAAAACAAATAATTAAGTCTACA ?????????????????????????? RG:Z:cow-[2] PG:Z:bull
16 x10 0 ref2*HLA:1a:2:b 10 30 25M * 0 0 CAAATAATTAAGTCTACAGAGCAAC ????????????????????????? RG:Z:cow-[2] PG:Z:bull
17 x11 0 ref2*HLA:1a:2:b 12 30 24M * 0 0 AATAATTAAGTCTACAGAGCAACT ???????????????????????? RG:Z:cow-[2] PG:Z:bull
18 x12 0 ref2*HLA:1a:2:b 14 30 23M * 0 0 TAATTAAGTCTACAGAGCAACTA ??????????????????????? RG:Z:cow-[2] PG:Z:bull
19 r005 163 ref1 7 30 8M4I4M1D3M = 37 39 TTAGATAAAGAGGATACTG * XX:B:S,12561,2,20,112 YY:i:100 RG:Z:colt PG:Z:donkey
20 r006 0 ref1 9 30 1S2I6M1P1I1P1I4M2I * 0 0 AAAAGATAAGGGATAAA * XA:Z:abc XB:i:-10 RG:Z:colt PG:Z:donkey
21 r007 0 ref1 9 30 5H6M * 0 0 AGCTAA * RG:Z:colt PG:Z:donkey
22 r007 0 ref1 16 30 6M14N1I5M * 0 0 ATAGCTCTCAGC * RG:Z:colt PG:Z:donkey
23 r006 16 ref1 29 30 6H5M * 0 0 TAGGC * RG:Z:colt PG:Z:donkey
24 r005 83 ref1 37 30 9M = 7 -39 CAGCGCCAT * RG:Z:colt PG:Z:donkey