Mercurial > repos > iuc > samtools_merge

comparison samtools_merge.xml @ 2:b40e2d865d52 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 1354b1358df89a922c3243f7e27ce789094b8644"
author iuc
date Sun, 19 Dec 2021 15:57:10 +0000
parents 8890e2d4c068
children 36677f429310
comparison
equal deleted inserted replaced
1:8890e2d4c068 2:b40e2d865d52
120 <output name="output" file="5.merge.expected.bam" ftype="bam" lines_diff="16" /> 120 <output name="output" file="5.merge.expected.bam" ftype="bam" lines_diff="16" />
121 </test> 121 </test>
122 <!-- Merge 6 - Merging with bedfile --> 122 <!-- Merge 6 - Merging with bedfile -->
123 <test> 123 <test>
124 <param name="bamfiles" value="test_input_1_a.bam,test_input_1_b.bam,test_input_1_c.bam" /> 124 <param name="bamfiles" value="test_input_1_a.bam,test_input_1_b.bam,test_input_1_c.bam" />
125 <param name="bed" value="yes" />
126 <param name="bed_file" value="test_input_1_a.bed" /> 125 <param name="bed_file" value="test_input_1_a.bed" />
127 <output name="output" file="6.merge.expected.bam" ftype="bam" lines_diff="16" /> 126 <output name="output" file="6.merge.expected.bam" ftype="bam" lines_diff="16" />
128 </test> 127 </test>
129 <!--Merge - 3 file SAM merge all presented on the command line override IDs to file names (not implemented in tool) --> 128 <!--Merge - 3 file SAM merge all presented on the command line override IDs to file names (not implemented in tool) -->
130 <!-- Sort inputs by PG, then merge (not implemented, since -t not supported in the tool) --> 129 <!-- Sort inputs by PG, then merge (not implemented, since -t not supported in the tool) -->