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view test-data/rebuild_output_bams.sh @ 7:c8bc9d08b0e3 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tool_collections/samtools/samtools_merge commit 19dd8b645a77899ff98d139d79de824a23f416bb
author iuc
date Wed, 12 Nov 2025 12:58:42 +0000
parents a7617eb92baf
children
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samtools merge -s 1 -f 1.merge.expected.bam <(samtools sort -O sam test_input_1_a.sam) <(samtools sort -O sam test_input_1_b.sam)  <(samtools sort -O sam test_input_1_c.sam)
samtools merge -s 1 -f 2.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam
samtools merge -s 1 -f 3.merge.expected.bam test_input_1_b.bam 
samtools merge -s 1 -f -c -p 4.merge.expected.bam test_input_1_a.bam test_input_1_b.bam
samtools merge -s 1 -f 5.merge.expected.bam test_input_1_a_regex.sam test_input_1_b_regex.sam
samtools merge -s 1 -f -L test_input_1_a.bed 6.merge.expected.bam test_input_1_a.bam test_input_1_b.bam test_input_1_c.bam