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view test-data/2.merge.expected.sam @ 5:cae2794d2deb draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_merge commit 9c5a35ce695c3d134e41d8695487edd5f71ea33c
author iuc
date Sun, 08 Sep 2024 03:26:24 +0000
parents 740ce0a18f0d
children
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@HD	VN:1.4
@SQ	SN:insert	LN:599
@SQ	SN:ref1	LN:45
@SQ	SN:ref2	LN:40
@SQ	SN:ref3	LN:4
@RG	ID:fish	PG:donkey
@RG	ID:cow	PU:13_&^&&*(:332
@RG	PU:*9u8jkjjkjd:	ID:colt
@RG	ID:fish-55424A4	PG:llama
@RG	ID:cow-3A2CCEF5	PU:13_&^&&*(:332	PG:donkey-4861F4EF
@RG	PU:*9u8jkjjkjd:	ID:colt-6ADB4A65
@RG	ID:fish-39E5EF
@RG	ID:cow-1802EEEC	PU:13_&^&&*(:332
@RG	PU:*9u8jkjjkjd:	ID:colt-7EC68B3F
@PG	ID:bull	PP:donkey
@PG	ID:donkey
@PG	ID:moose
@PG	PP:moose	ID:cow
@PG	ID:llama
@PG	ID:bull-2B019719	PP:donkey-4861F4EF
@PG	ID:donkey-4861F4EF
@PG	ID:bull-60104A41	PP:donkey-2EE20DF8
@PG	ID:donkey-2EE20DF8
@CO	
@CO	Do you know?
@CO	Do you know?
@CO	Another comment from test_input_1_c
r000	99	insert	50	30	10M	=	80	30	ATTTAGCTAC	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
r000	211	insert	80	30	10M	=	50	-30	CCCAATCATT	AAAAAAAAAA	RG:Z:cow	PG:Z:bull
r001	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:fish
r005	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
r008	163	ref1	7	30	8M4I4M1D3M	=	37	39	TTAGATAAAGAGGATACTG	*	XX:B:S,12561,2,20,112	YY:i:100	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
r002	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10
r003	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:cow
r006	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
r007	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
r009	0	ref1	9	30	1S2I6M1P1I1P1I4M2I	*	0	0	AAAAGATAAGGGATAAA	*	XA:Z:abc	XB:i:-10	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
r010	0	ref1	9	30	5H6M	*	0	0	AGCTAA	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
r004	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt
r007	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
r010	0	ref1	16	30	6M14N1I5M	*	0	0	ATAGCTCTCAGC	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
r003	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:cow
r006	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
r009	16	ref1	29	30	6H5M	*	0	0	TAGGC	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
r001	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:fish
r005	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt-6ADB4A65	PG:Z:donkey-4861F4EF
r008	83	ref1	37	30	9M	=	7	-39	CAGCGCCAT	*	RG:Z:colt-7EC68B3F	PG:Z:donkey-2EE20DF8
x1	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:colt	PG:Z:bull
x7	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
x10	0	ref2	1	30	20M	*	0	0	AGGTTTTATAAAACAAATAA	*	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
x2	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:colt	PG:Z:bull
x8	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
x11	0	ref2	2	30	21M	*	0	0	GGTTTTATAAAACAAATAATT	?????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
x3	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:fish	PG:Z:bull
x9	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
x12	0	ref2	6	30	9M4I13M	*	0	0	TTATAAAACAAATAATTAAGTCTACA	??????????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
x4	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:fish	PG:Z:bull
x10	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
x13	0	ref2	10	30	25M	*	0	0	CAAATAATTAAGTCTACAGAGCAAC	?????????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
x5	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:fish	PG:Z:bull
x11	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
x14	0	ref2	12	30	24M	*	0	0	AATAATTAAGTCTACAGAGCAACT	????????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
x6	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow
x12	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow-3A2CCEF5	PG:Z:bull-2B019719
x15	0	ref2	14	30	23M	*	0	0	TAATTAAGTCTACAGAGCAACTA	???????????????????????	RG:Z:cow-1802EEEC	PG:Z:bull-60104A41
u1	4	*	0	30	23M	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????
u2	4	*	0	30	*	*	0	0	TAATTAAGTCTACAGAAAAAAAA	???????????????????????