Mercurial > repos > iuc > samtools_view

diff samtools_view.xml @ 11:df20f1fd453f draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/samtools/samtools_view commit 1d2666cfe206ef538fd811dbccaec2e8f3c6f7f0"
author iuc
date Wed, 13 Oct 2021 13:11:51 +0000
parents 350bbc5c2ffd
children c370440f901e
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--- a/samtools_view.xml	Tue Sep 28 16:18:32 2021 +0000
+++ b/samtools_view.xml	Wed Oct 13 13:11:51 2021 +0000
@@ -1,4 +1,4 @@
-<tool id="samtools_view" name="Samtools view" version="@TOOL_VERSION@" profile="@PROFILE@">
+<tool id="samtools_view" name="Samtools view" version="@TOOL_VERSION@+galaxy1" profile="@PROFILE@">
     <description>- reformat, filter, or subsample SAM, BAM or CRAM</description>
     <macros>
         <import>macros.xml</import>
@@ -313,7 +313,7 @@
                     </param>
                     <param  argument="--tag" type="text" optional="true" label="Filter by tag" help="Only include reads with tag STR1 and associated value STR2. Write in the format STR1:STR2 (see help for more details)." />
                     <!-- TODO implement -D -->
-                    <param argument="--qname-file" format="text" optional="true" type="data" label="Filter by readnames" help="Only output alignments with readnames that are listed in this file." />
+                    <param argument="--qname-file" format="txt" optional="true" type="data" label="Filter by readnames" help="Only output alignments with readnames that are listed in this file." />
                 </section>
                 <section name="subsample_config" title="Configure subsampling" expanded="false">
                     <conditional name="subsampling_mode">