Mercurial > repos > iuc > sarscov2summary

comparison test-data/summary.json @ 0:4ad8b610ea41 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/sarscov2summary commit a9dbee25f6ad053c0c9b78f85276c7c839d2ab7a"
author iuc
date Mon, 04 May 2020 05:42:35 -0400
parents
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comparison
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-1:000000000000 0:4ad8b610ea41
1 {
2 "L": 0.0004157193380971021,
3 "MAF": 0.2,
4 "all variant sites": [
5 {
6 "GAT": 6,
7 "GGT": 5
8 }
9 ],
10 "aminoacid variant sites": [
11 {
12 "D": 6,
13 "G": 5
14 }
15 ],
16 "any variation": 12,
17 "bl": {
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24 "MT293207": 0.0002405918862548088,
25 "MT345866": 0.0002405886115007371,
26 "MT350282": 0.00024060588962986,
27 "MultiSeq0_24": 0,
28 "MultiSeq1_15": 0,
29 "Node6": 0.0004157193380971021
30 },
31 "dN/dS": {
32 "internal": [
33 [
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1320 "p": 0.1,
1321 "selection": {
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1324 "composition": {
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1327 },
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1342 ],
1343 "MT263450": [
1344 "D",
1345 "GAT",
1346 0,
1347 0
1348 ],
1349 "MT263469": [
1350 "D",
1351 "GAT",
1352 0,
1353 0
1354 ],
1355 "MT292570": [
1356 "G",
1357 "GGT",
1358 0,
1359 0
1360 ],
1361 "MT292573": [
1362 "D",
1363 "GAT",
1364 0,
1365 0
1366 ],
1367 "MT293207": [
1368 "G",
1369 "GGT",
1370 0,
1371 0
1372 ],
1373 "MT345866": [
1374 "G",
1375 "GGT",
1376 0,
1377 0
1378 ],
1379 "MT350282": [
1380 "D",
1381 "GAT",
1382 0,
1383 0
1384 ],
1385 "MultiSeq0_24": [
1386 "D",
1387 "GAT",
1388 0,
1389 0
1390 ],
1391 "MultiSeq1_15": [
1392 "G",
1393 "GGT",
1394 0,
1395 0
1396 ],
1397 "Node12": [
1398 "D",
1399 "GAT",
1400 0,
1401 0
1402 ],
1403 "Node6": [
1404 "G",
1405 "GGT",
1406 1,
1407 0
1408 ]
1409 },
1410 "meme": 0.02491607419919761,
1411 "meme-branches": 1,
1412 "meme-fraction": 0.99999999,
1413 "prime": [],
1414 "substitutions": [
1415 0,
1416 1
1417 ],
1418 "timing": {
1419 "D": [
1420 [
1421 "20200121",
1422 "USA",
1423 "North America",
1424 1,
1425 null,
1426 null
1427 ],
1428 [
1429 "20200324",
1430 "USA",
1431 "North America",
1432 3,
1433 null,
1434 null
1435 ],
1436 [
1437 "20200315",
1438 "USA",
1439 "North America",
1440 1,
1441 null,
1442 null
1443 ],
1444 [
1445 "20200309",
1446 "Spain",
1447 "Europe",
1448 1,
1449 null,
1450 null
1451 ],
1452 [
1453 "20200318",
1454 "Brazil",
1455 "South America",
1456 1,
1457 null,
1458 null
1459 ],
1460 [
1461 "20191230",
1462 "China",
1463 "Asia",
1464 1,
1465 null,
1466 null
1467 ],
1468 [
1469 "20200129",
1470 "USA",
1471 "North America",
1472 1,
1473 null,
1474 null
1475 ],
1476 [
1477 "20200217",
1478 "USA",
1479 "North America",
1480 2,
1481 null,
1482 null
1483 ],
1484 [
1485 "20200122",
1486 "Vietnam",
1487 "Asia",
1488 1,
1489 null,
1490 null
1491 ],
1492 [
1493 "20200304",
1494 "Pakistan",
1495 "Asia",
1496 1,
1497 null,
1498 null
1499 ],
1500 [
1501 "20200312",
1502 "USA",
1503 "North America",
1504 1,
1505 null,
1506 null
1507 ],
1508 [
1509 "20200124",
1510 "China",
1511 "Asia",
1512 1,
1513 null,
1514 null
1515 ],
1516 [
1517 "20200314",
1518 "USA",
1519 "North America",
1520 1,
1521 null,
1522 null
1523 ],
1524 [
1525 "20200313",
1526 "USA",
1527 "North America",
1528 4,
1529 null,
1530 null
1531 ],
1532 [
1533 "20200316",
1534 "USA",
1535 "North America",
1536 1,
1537 null,
1538 null
1539 ],
1540 [
1541 "20200301",
1542 "USA",
1543 "North America",
1544 2,
1545 null,
1546 null
1547 ],
1548 [
1549 "20200321",
1550 "USA",
1551 "North America",
1552 1,
1553 null,
1554 null
1555 ],
1556 [
1557 "20200307",
1558 "USA",
1559 "North America",
1560 1,
1561 null,
1562 null
1563 ],
1564 [
1565 "20200305",
1566 "USA",
1567 "North America",
1568 1,
1569 null,
1570 null
1571 ],
1572 [
1573 "20200319",
1574 "USA",
1575 "North America",
1576 1,
1577 null,
1578 null
1579 ]
1580 ],
1581 "G": [
1582 [
1583 "20200324",
1584 "USA",
1585 "North America",
1586 2,
1587 null,
1588 null
1589 ],
1590 [
1591 "20200310",
1592 "Spain",
1593 "Europe",
1594 1,
1595 null,
1596 null
1597 ],
1598 [
1599 "20200319",
1600 "USA",
1601 "North America",
1602 1,
1603 null,
1604 null
1605 ],
1606 [
1607 "20200323",
1608 "USA",
1609 "North America",
1610 1,
1611 null,
1612 null
1613 ],
1614 [
1615 "20200229",
1616 "USA",
1617 "North America",
1618 1,
1619 null,
1620 null
1621 ],
1622 [
1623 "20200330",
1624 "USA",
1625 "North America",
1626 1,
1627 null,
1628 null
1629 ],
1630 [
1631 "20200328",
1632 "USA",
1633 "North America",
1634 1,
1635 null,
1636 null
1637 ],
1638 [
1639 "20200320",
1640 "USA",
1641 "North America",
1642 1,
1643 null,
1644 null
1645 ],
1646 [
1647 "20200321",
1648 "USA",
1649 "North America",
1650 1,
1651 null,
1652 null
1653 ],
1654 [
1655 "20200318",
1656 "USA",
1657 "North America",
1658 1,
1659 null,
1660 null
1661 ],
1662 [
1663 "20200305",
1664 "USA",
1665 "North America",
1666 1,
1667 null,
1668 null
1669 ],
1670 [
1671 "20200325",
1672 "USA",
1673 "North America",
1674 3,
1675 null,
1676 null
1677 ],
1678 [
1679 "20200326",
1680 "USA",
1681 "North America",
1682 1,
1683 null,
1684 null
1685 ],
1686 [
1687 "20200307",
1688 "USA",
1689 "North America",
1690 1,
1691 null,
1692 null
1693 ]
1694 ]
1695 },
1696 "trend": 3.578005774935007
1697 }
1698 },
1699 "sequences": 11,
1700 "sites": 1273,
1701 "total sequences": 44,
1702 "tree": "(MN988713,MT292573,MT263469,MT350282,MultiSeq0_24,(MT292570,MT293207,MT345866,MT263436,MultiSeq1_15)Node6,MT263450)"
1703 }