# HG changeset patch
# User iuc
# Date 1710430743 0
# Node ID 6f83f8fd381fdfe3715f921e499a4c5e8a6ec935
# Parent  6acb089318361882564b9bdf01cab8c9b8e029f3
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 3974c0ff86bb1d6633281f29dfb4c605a74e1e6e

diff -r 6acb08931836 -r 6f83f8fd381f cluster_reduce_dimension.xml
--- a/cluster_reduce_dimension.xml	Fri Nov 17 09:13:40 2023 +0000
+++ b/cluster_reduce_dimension.xml	Thu Mar 14 15:39:03 2024 +0000
@@ -294,7 +294,7 @@
                 <param argument="groups" type="text" value="louvain" label="Key for categorical in the input" help="You can pass your predefined groups by choosing any categorical annotation of observations ('adata.obs').">
                     <expand macro="sanitize_query" />
                 </param>
-                <param argument="use_rna_velocity" type="boolean" truevalue="False" falsevalue="False" checked="false" label="Use RNA velocity to orient edges in the abstracted graph and estimate transitions?" help="Requires that 'adata.uns' contains a directed single-cell graph with key '['velocyto_transitions']'. This feature might be subject to change in the future."/>
+                <param argument="use_rna_velocity" type="boolean" truevalue="True" falsevalue="False" checked="false" label="Use RNA velocity to orient edges in the abstracted graph and estimate transitions?" help="Requires that 'adata.uns' contains a directed single-cell graph with key '['velocyto_transitions']'. This feature might be subject to change in the future."/>
                 <param argument="model" type="select" label="PAGA connectivity model" help="">
                     <option value="v1.2">v1.2</option>
                     <option value="v1.0">v1.0</option>
diff -r 6acb08931836 -r 6f83f8fd381f macros.xml
--- a/macros.xml	Fri Nov 17 09:13:40 2023 +0000
+++ b/macros.xml	Thu Mar 14 15:39:03 2024 +0000
@@ -1,6 +1,6 @@
 <macros>
     <token name="@TOOL_VERSION@">1.9.6</token>
-    <token name="@VERSION_SUFFIX@">1</token>
+    <token name="@VERSION_SUFFIX@">2</token>
     <token name="@profile@">22.05</token>
     <xml name="requirements">
         <requirements>
@@ -11,6 +11,7 @@
             <requirement type="package" version="1.5.3">pandas</requirement>
             <requirement type="package" version="3.7">matplotlib</requirement>
             <requirement type="package" version="0.12.2">seaborn</requirement>
+            <requirement type="package" version="3.0.0">magic-impute</requirement>
             <yield />
         </requirements>
     </xml>
diff -r 6acb08931836 -r 6f83f8fd381f test-data/external.pp.magic.all_genes.krumsiek11.h5ad
Binary file test-data/external.pp.magic.all_genes.krumsiek11.h5ad has changed
diff -r 6acb08931836 -r 6f83f8fd381f test-data/external.pp.magic.pca_only.krumsiek11.h5ad
Binary file test-data/external.pp.magic.pca_only.krumsiek11.h5ad has changed