Mercurial > repos > iuc > scanpy_filter

comparison filter.xml @ 7:3c86f71498bc draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
author iuc
date Wed, 20 May 2020 16:12:00 -0400
parents a97abb8cd15b
children f87ed6503715
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6:a97abb8cd15b 7:3c86f71498bc
163 <param argument="max_cells" type="integer" min="0" value="" label="Maximum number of cells expressed required for a gene to pass filtering"/> 163 <param argument="max_cells" type="integer" min="0" value="" label="Maximum number of cells expressed required for a gene to pass filtering"/>
164 </when> 164 </when>
165 </conditional> 165 </conditional>
166 </when> 166 </when>
167 <when value="tl.filter_rank_genes_groups"> 167 <when value="tl.filter_rank_genes_groups">
168 <param argument="key" type="text" optional="true" label="Key in adata.uns where the rank_genes_groups output is stored"/> 168 <param argument="key" type="text" optional="true" label="Key in adata.uns where the rank_genes_groups output is stored">
169 <param argument="groupby" type="text" optional="true" label="The key of the observations grouping to consider"/> 169 <expand macro="sanitize_query" />
170 </param>
171 <param argument="groupby" type="text" optional="true" label="The key of the observations grouping to consider">
172 <expand macro="sanitize_query" />
173 </param>
170 <expand macro="param_use_raw"/> 174 <expand macro="param_use_raw"/>
171 <expand macro="param_log"/> 175 <expand macro="param_log"/>
172 <param argument="key_added" type="text" value="rank_genes_groups_filtered" label="Key that will contain new values"/> 176 <param argument="key_added" type="text" value="rank_genes_groups_filtered" label="Key that will contain new values">
177 <expand macro="sanitize_query" />
178 </param>
173 <param argument="min_in_group_fraction" type="float" min="0" max="1" value="0.25" label="Minimum fraction of genes expressing the gene within the categories"/> 179 <param argument="min_in_group_fraction" type="float" min="0" max="1" value="0.25" label="Minimum fraction of genes expressing the gene within the categories"/>
174 <param argument="max_out_group_fraction" type="float" min="0" max="1" value="0.5" label="Maximum fraction of genes expressing the gene outside the categories"/> 180 <param argument="max_out_group_fraction" type="float" min="0" max="1" value="0.5" label="Maximum fraction of genes expressing the gene outside the categories"/>
175 <param argument="min_fold_change" type="integer" value="2" label="Minimum fold change"/> 181 <param argument="min_fold_change" type="integer" value="2" label="Minimum fold change"/>
176 </when> 182 </when>
177 <when value="pp.highly_variable_genes"> 183 <when value="pp.highly_variable_genes">