Mercurial > repos > iuc > scanpy_inspect

diff inspect.xml @ 5:08192eebb47d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85"
author iuc
date Mon, 10 Feb 2020 05:29:16 -0500
parents cc0deb593fc8
children 5e9171dc8244
line wrap: on
line diff
--- a/inspect.xml	Wed Dec 18 16:04:45 2019 -0500
+++ b/inspect.xml	Mon Feb 10 05:29:16 2020 -0500
@@ -804,7 +804,7 @@
 - pct_dropout_by_{expr_type} (e.g. "pct_dropout_by_counts", percentage of cells this feature does not appear in)
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.calculate_qc_metrics.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.calculate_qc_metrics.html>`__
 
 Compute a neighborhood graph of observations, using `pp.neighbors`
 ==================================================================
@@ -823,7 +823,7 @@
 This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.neighbors.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.neighbors.html>`__
 
 Score a set of genes, using `tl.score_genes`
 ============================================
@@ -836,7 +836,7 @@
 for Scanpy by Davide Cittaro.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.score_genes.html>`__
 
 Score cell cycle genes, using `tl.score_genes_cell_cycle`
 =========================================================
@@ -846,7 +846,7 @@
 `score_genes` for more explanation.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes_cell_cycle.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.score_genes_cell_cycle.html>`__
 
 Rank genes for characterizing groups, using `tl.rank_genes_groups`
 ==================================================================
@@ -862,7 +862,7 @@
 This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.rank_genes_groups.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.tl.rank_genes_groups.html>`__
 
 
 Calculate an overlap score between data-deriven marker genes and provided markers (`tl.marker_gene_overlap`)
@@ -875,13 +875,13 @@
 =========================================
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.log1p.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.log1p.html>`__
 
 Scale data to unit variance and zero mean (`pp.scale`)
 ======================================================
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.scale.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.scale.html>`__
 
 Computes the square root the data matrix (`pp.sqrt`)
 ====================================================