Mercurial > repos > iuc > scanpy_inspect

diff inspect.xml @ 14:f54f0f0598ad draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 9d49b2a98de059ae9a053dc1c5a23537cf0311de
author iuc
date Sat, 18 May 2024 18:33:09 +0000
parents 3081ff5c84a3
children ca086f24422f
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line diff
--- a/inspect.xml	Thu Mar 14 15:39:51 2024 +0000
+++ b/inspect.xml	Sat May 18 18:33:09 2024 +0000
@@ -893,7 +893,7 @@
 - pct_dropout_by_{expr_type} (e.g. "pct_dropout_by_counts", percentage of cells this feature does not appear in)
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.calculate_qc_metrics.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.calculate_qc_metrics.html>`__
 
 Compute a neighborhood graph of observations, using `pp.neighbors`
 ==================================================================
@@ -912,7 +912,7 @@
 This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.neighbors.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/generated/scanpy.pp.neighbors.html>`__
 
 Score a set of genes, using `tl.score_genes`
 ============================================
@@ -925,7 +925,7 @@
 for Scanpy by Davide Cittaro.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.tl.score_genes.html>`__
 
 Score cell cycle genes, using `tl.score_genes_cell_cycle`
 =========================================================
@@ -935,7 +935,7 @@
 `score_genes` for more explanation.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.score_genes_cell_cycle.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.tl.score_genes_cell_cycle.html>`__
 
 Rank genes for characterizing groups, using `tl.rank_genes_groups`
 ==================================================================
@@ -951,7 +951,7 @@
 This data are stored in the unstructured annotation (uns) and can be accessed using the inspect tool for AnnData objects
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.tl.rank_genes_groups.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.tl.rank_genes_groups.html>`__
 
 
 Calculate an overlap score between data-deriven marker genes and provided markers (`tl.marker_gene_overlap`)
@@ -964,13 +964,13 @@
 =========================================
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.log1p.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.log1p.html>`__
 
 Scale data to unit variance and zero mean (`pp.scale`)
 ======================================================
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.scale.html>`__
+<https://scanpy.readthedocs.io/en/stable/api/scanpy.pp.scale.html>`__
 
 Computes the square root the data matrix (`pp.sqrt`)
 ====================================================