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file blobs.h5ad 74040 -rw-r--r--
file cosg.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_1.h5ad 561560 -rw-r--r--
file cosg.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_1_out.h5ad 561560 -rw-r--r--
file external.pp.bbknn.krumsiek11.h5ad 215688 -rw-r--r--
file krumsiek11.h5ad 77632 -rw-r--r--
file krumsiek11.loom 44645 -rw-r--r--
file krumsiek11_counts_per_cell 16000 -rw-r--r--
file paul15_subsample.h5ad 838114 -rw-r--r--
file pbmc68k_reduced.h5ad 544824 -rw-r--r--
file pl.clustermap.krumsiek11.png 54789 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsampl.png 9879 -rw-r--r--
file pl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 9839 -rw-r--r--
file pl.dotplot.krumsiek11.png 32852 -rw-r--r--
file pl.dpt_groups_pseudotime.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 22088 -rw-r--r--
file pl.dpt_timeseries.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.png 112200 -rw-r--r--
file pl.draw_graph.png 150057 -rw-r--r--
file pl.embedding_density.pbmc68k_reduced.png 123621 -rw-r--r--
file pl.heatmap.krumsiek11.png 25556 -rw-r--r--
file pl.highest_expr_genes.filter_genes_dispersion.krumsiek11-seurat.png 17117 -rw-r--r--
file pl.highly_variable_genes.seurat.blobs.png 34484 -rw-r--r--
file pl.matrixplot.krumsiek11.png 16583 -rw-r--r--
file pl.paga.paul15_gauss_braycurtis.png 34309 -rw-r--r--
file pl.paga_compare.paul15_gauss_braycurtis.png 47952 -rw-r--r--
file pl.pca.pbmc68k_reduced.CD3D_CD79A_components_2d.pdf 24001 -rw-r--r--
file pl.pca_loadings.pp.pca.krumsiek11.png 32366 -rw-r--r--
file pl.pca_overview.pp.pca.krumsiek11.png 8961 -rw-r--r--
file pl.pca_variance_ratio.pp.pca.krumsiek11.png 14229 -rw-r--r--
file pl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_1.png 697709 -rw-r--r--
file pl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_filtered_1.png 328486 -rw-r--r--
file pl.rank_genes_groups.rank_genes_groups.krumsiek11.png 52901 -rw-r--r--
file pl.rank_genes_groups_dotplot.rank_genes_groups.krumsiek11.png 88159 -rw-r--r--
file pl.rank_genes_groups_heatmap.rank_genes_groups.krumsiek11.png 57018 -rw-r--r--
file pl.rank_genes_groups_matrixplot.rank_genes_groups.krumsiek11.png 27151 -rw-r--r--
file pl.rank_genes_groups_stacked_violin.rank_genes_groups.krumsiek11.png 103357 -rw-r--r--
file pl.rank_genes_groups_tracksplot.newton-cg.pbmc68k_highly_reduced_marker_filtered_1.png 347317 -rw-r--r--
file pl.rank_genes_groups_violin.Ery.png 76700 -rw-r--r--
file pl.rank_genes_groups_violin.Mk.png 81340 -rw-r--r--
file pl.rank_genes_groups_violin.Mo.png 72949 -rw-r--r--
file pl.rank_genes_groups_violin.Neu.png 72425 -rw-r--r--
file pl.rank_genes_groups_violin.progenitor.png 91048 -rw-r--r--
file pl.scatter.krumsiek11.png 18157 -rw-r--r--
file pl.scatter.pbmc68k_reduced.png 17846 -rw-r--r--
file pl.scatter.pca.krumsiek11.png 35730 -rw-r--r--
file pl.scatter.umap.pbmc68k_reduced.png 11754 -rw-r--r--
file pl.scrublet_score_distribution.png 19403 -rw-r--r--
file pl.stacked_violin.krumsiek11.png 28222 -rw-r--r--
file pl.stacked_violin_pp.filter_genes_dispersion.krumsiek11-seurat.png 13988 -rw-r--r--
file pl.tsne.krumsiek11.png 11672 -rw-r--r--
file pl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.png 119587 -rw-r--r--
file pl.violin.pbmc68k_reduced_custom.png 57494 -rw-r--r--
file pp.combat.blobs.h5ad 102200 -rw-r--r--
file pp.filter_cells.krumsiek11-min_counts.loom 34680 -rw-r--r--
file pp.filter_genes_dispersion.krumsiek11-seurat.h5ad 64744 -rw-r--r--
file pp.highly_variable_genes.seurat.blobs.h5ad 77328 -rw-r--r--
file pp.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 830440 -rw-r--r--
file pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 828568 -rw-r--r--
file pp.normalize_per_cell.krumsiek11.h5ad 43248 -rw-r--r--
file pp.pca.krumsiek11.batch.h5ad 114936 -rw-r--r--
file pp.pca.krumsiek11.h5ad 110864 -rw-r--r--
file pp.pca.variance.krumsiek11.tabular 250 -rw-r--r--
file pp.recipe_weinreb17.paul15_subsample.h5ad 768368 -rw-r--r--
file pp.recipe_zheng17.random-randint.h5ad 487656 -rw-r--r--
file pp.regress_out.krumsiek11.h5ad 77632 -rw-r--r--
file pp.scrublet.krumsiek11.h5ad 120368 -rw-r--r--
file random-randint.h5ad 466040 -rw-r--r--
file random.h5ad 42448 -rw-r--r--
file sparce_csr_matrix.h5ad 391040 -rw-r--r--
file tl.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 837128 -rw-r--r--
file tl.dpt.diffmap.neighbors_gauss_braycurtis.recipe_weinreb17.paul15_subsample.h5ad 843648 -rw-r--r--
file tl.dpt.neighbors.paul15_gauss_braycurtis.obs.tabular 86632 -rw-r--r--
file tl.draw_graph.pp.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 834088 -rw-r--r--
file tl.embedding_density.umap.pbmc68k_reduced.h5ad 577776 -rw-r--r--
file tl.paga.neighbors.paul15_gauss_braycurtis.h5ad 802456 -rw-r--r--
file tl.pca.krumsiek11.h5ad 110864 -rw-r--r--
file tl.pca.variance_ratio.krumsiek11.tabular 250 -rw-r--r--
file tl.rank_genes_groups.krumsiek11.h5ad 87096 -rw-r--r--
file tl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_1.tsv 3348 -rw-r--r--
file tl.rank_genes_groups.newton-cg.pbmc68k_highly_reduced_marker_filtered_1.tsv 1653 -rw-r--r--
file tl.rank_genes_groups.newton-cg.pbmc68k_reduced.h5ad 522128 -rw-r--r--
file tl.tsne.krumsiek11.h5ad 87528 -rw-r--r--
file tl.tsne.krumsiek11_X_tsne.tabular 32596 -rw-r--r--
file tl.umap.neighbors_umap_euclidean.recipe_weinreb17.paul15_subsample.h5ad 832048 -rw-r--r--