Mercurial > repos > iuc > scanpy_normalize
diff normalize.xml @ 12:94c19fb1281c draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6fc3a3aa54d7ece1fd8bfffe62ad7e2b620539e0
| author | iuc |
|---|---|
| date | Fri, 17 Nov 2023 09:16:03 +0000 |
| parents | c9cb76cf8d6c |
| children | 7b9fafe32c86 |
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--- a/normalize.xml Wed Nov 08 14:49:18 2023 +0000 +++ b/normalize.xml Fri Nov 17 09:16:03 2023 +0000 @@ -1,4 +1,4 @@ -<tool id="scanpy_normalize" name="Normalize" version="@galaxy_version@" profile="@profile@"> +<tool id="scanpy_normalize" name="Normalize" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="@profile@"> <description>with scanpy</description> <macros> <import>macros.xml</import> @@ -17,17 +17,17 @@ #if $method.method == "pp.normalize_total" sc.pp.normalize_total( adata, - #if str($method.target_sum)!= '' + #if str($method.target_sum) != '' target_sum=$method.target_sum, #end if exclude_highly_expressed=$method.exclude_highly_expressed.exclude_highly_expressed, #if $method.exclude_highly_expressed.exclude_highly_expressed == "True" max_fraction=$method.exclude_highly_expressed.max_fraction, #end if - #if str($method.key_added) != '' + #if $method.key_added key_added='$method.key_added', #end if - #if str($method.layers) != '' + #if $method.layers #if str($method.layers) != 'all' layers[str(x.strip()) for x in str($method.layers).split(',')], #else