Mercurial > repos > iuc > scanpy_normalize

diff normalize.xml @ 7:a407e7f8bdc1 draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 150c96596b94f9658c8b7c44814c420d38fbee0c"
author iuc
date Wed, 20 May 2020 16:09:36 -0400
parents 3bcd5445cd7a
children 5342ce58cd1e
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--- a/normalize.xml	Thu Feb 20 08:24:54 2020 -0500
+++ b/normalize.xml	Wed May 20 16:09:36 2020 -0400
@@ -91,8 +91,12 @@
                     </when>
                     <when value="False"/>
                 </conditional>
-                <param argument="key_added" type="text" value="" optional="true" label="Name of the field in 'adata.obs' where the normalization factor is stored" help=""/>
-                <param argument="layers" type="text" value="" optional="true" label="List of layers to normalize" help="'All' will normalize all layers. The list should be comma-separated."/>
+                <param argument="key_added" type="text" value="" optional="true" label="Name of the field in 'adata.obs' where the normalization factor is stored" help="">
+                    <expand macro="sanitize_query" />
+                </param>
+                <param argument="layers" type="text" value="" optional="true" label="List of layers to normalize" help="'All' will normalize all layers. The list should be comma-separated.">
+                    <expand macro="sanitize_query" />
+                </param>
                 <param argument="layer_norm" type="select" label="How to normalize layers?">
                     <option value="None">None: after normalization, for each layer in layers each cell has a total count equal to the median of the median of the total counts (cells) before normalization of the layer.</option>
                     <option value="after">After: for each layer in layers each cell has a total count equal to target_sum.</option>