--- a/normalize.xml	Wed Sep 22 21:12:45 2021 +0000
+++ b/normalize.xml	Wed Nov 08 14:49:18 2023 +0000
@@ -1,9 +1,9 @@
 <tool id="scanpy_normalize" name="Normalize" version="@galaxy_version@" profile="@profile@">
     <description>with scanpy</description>
-    <expand macro="bio_tools"/>
     <macros>
         <import>macros.xml</import>
     </macros>
+    <expand macro="bio_tools"/>
     <expand macro="requirements"/>
     <expand macro="version_command"/>
     <command detect_errors="exit_code"><![CDATA[
@@ -126,8 +126,8 @@
         <expand macro="anndata_outputs"/>
     </outputs>
     <tests>
-        <test>
-            <!-- test 0 -->
+        <test expect_num_outputs="2">
+            <!-- test 1 -->
             <param name="adata" value="krumsiek11.h5ad" />
             <conditional name="method">
                 <param name="method" value="pp.normalize_total"/>
@@ -151,8 +151,8 @@
             </output>
             <output name="anndata_out" file="pp.normalize_total.krumsiek11.h5ad" ftype="h5ad" compare="sim_size"/>
         </test>
-        <test>
-            <!-- test 1 -->
+        <test expect_num_outputs="2">
+            <!-- test 2 -->
             <param name="adata" value="random-randint.h5ad"/>
             <conditional name="method">
                 <param name="method" value="pp.recipe_zheng17"/>
@@ -171,8 +171,8 @@
             </output>
             <output name="anndata_out" file="pp.recipe_zheng17.random-randint.h5ad" ftype="h5ad" compare="sim_size" delta="1000000" delta_frac="0.15"/>
         </test>
-        <test>
-            <!-- test 2 -->
+        <test expect_num_outputs="2">
+            <!-- test 3 -->
             <param name="adata" value="paul15_subsample.h5ad" />
             <conditional name="method">
                 <param name="method" value="pp.recipe_weinreb17"/>
@@ -199,8 +199,8 @@
             </output>
             <output name="anndata_out" file="pp.recipe_weinreb17.paul15_subsample.updated.h5ad" ftype="h5ad" compare="sim_size"/>
         </test>
-        <test>
-            <!-- test 3 -->
+        <test expect_num_outputs="2">
+            <!-- test 4 -->
             <param name="adata" value="pp.recipe_zheng17.random-randint.h5ad" />
             <conditional name="method">
                 <param name="method" value="pp.recipe_seurat"/>
@@ -228,7 +228,7 @@
 Similar functions are used, for example, by Seurat, Cell Ranger or SPRING.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.normalize_per_cell.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.normalize_per_cell.html>`__
 
 
 Normalization and filtering as of Zheng et al. (2017), the Cell Ranger R Kit of 10x Genomics (`pp.recipe_zheng17`)
@@ -247,7 +247,7 @@
 - scale to unit variance and shift to zero mean
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.recipe_zheng17.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_zheng17.html>`__
 
 
 Normalization and filtering as of Weinreb et al (2017) (`pp.recipe_weinreb17`)
@@ -256,7 +256,7 @@
 Expects non-logarithmized data. If using logarithmized data, pass `log=False`.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.recipe_weinreb17.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_weinreb17.html>`__
 
 
 Normalization and filtering as of Seurat et al (2015) (`pp.recipe_seurat`)
@@ -267,7 +267,7 @@
 Expects non-logarithmized data. If using logarithmized data, pass `log=False`.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.recipe_seurat.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_seurat.html>`__
 
     ]]></help>
     <expand macro="citations"/>