Mercurial > repos > iuc > scanpy_normalize

diff normalize.xml @ 5:ec32793ce1dd draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/scanpy/ commit 6b5d0d6f038ebd0fae5dbca02ada51555518ed85"
author iuc
date Mon, 10 Feb 2020 05:28:35 -0500
parents d7ea9b5e6df1
children 3bcd5445cd7a
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line diff
--- a/normalize.xml	Wed Dec 18 16:02:56 2019 -0500
+++ b/normalize.xml	Mon Feb 10 05:28:35 2020 -0500
@@ -203,7 +203,7 @@
 Similar functions are used, for example, by Seurat, Cell Ranger or SPRING.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.normalize_per_cell.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.normalize_per_cell.html>`__
 
 
 Normalization and filtering as of Zheng et al. (2017), the Cell Ranger R Kit of 10x Genomics (`pp.recipe_zheng17`)
@@ -222,7 +222,7 @@
 - scale to unit variance and shift to zero mean
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_zheng17.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.recipe_zheng17.html>`__
 
 
 Normalization and filtering as of Weinreb et al (2017) (`pp.recipe_weinreb17`)
@@ -231,7 +231,7 @@
 Expects non-logarithmized data. If using logarithmized data, pass `log=False`.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_weinreb17.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.recipe_weinreb17.html>`__
 
 
 Normalization and filtering as of Seurat et al (2015) (`pp.recipe_seurat`)
@@ -242,7 +242,7 @@
 Expects non-logarithmized data. If using logarithmized data, pass `log=False`.
 
 More details on the `scanpy documentation
-<https://icb-scanpy.readthedocs-hosted.com/en/stable/api/scanpy.pp.recipe_seurat.html>`__
+<https://icb-scanpy.readthedocs-hosted.com/en/@version@/api/scanpy.pp.recipe_seurat.html>`__
 
     ]]></help>
     <expand macro="citations"/>